[Bioperl-l] Perl Regular Expressions sought that match typical

Heikki Lehvaslaiho heikki at nildram.co.uk
Sat Apr 10 14:50:30 EDT 2004


Shahid,

After two replies from Andreas and Jeffrey two weeks ago, it is bad form to 
resend exactly same question again. Acknowledge their contributions and take 
the discussion forward.

Yours,
		-Heikki

On Saturday 10 Apr 2004 21:42, M.Shahid wrote:
> Dear All,
> For a small software project, I'm looking for Perl Regular
> Expressions that match file formats and related input used
> for bioinformatics applications, e.g. FASTA, Clustal,
> PROSITE patterns, PAM similarity matrices, etc. Note
> that I do not want to parse such data, just check whether
> the format is correct. Is there any compilation out there ?
> If not, what is the best starting point to collect such Regular
> Expressions ?
>
> Best Wishes,
>
> M. Shahid
>
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