[Bioperl-l] Error message when parsing Blast report

laurence.amilhat at biogemma.com laurence.amilhat at biogemma.com
Wed Apr 14 03:43:08 EDT 2004


Hi everybody, 


I tried to parse a blast report using the BioPerl modules.
I have this error message:
------------- EXCEPTION: Bio::Root::Exception -------------
MSG: no data for midline ........................done
STACK: Error::throw
STACK: Bio::Root::Root::throw 
/usr/lib/perl-5.6.0/lib/site_perl/5.6.0/Bio/Root/Root.pm:328
STACK: Bio::SearchIO::blast::next_result 
/usr/lib/perl-5.6.0/lib/site_perl/5.6.0/Bio/SearchIO/blast.pm:1151
STACK: blast_retour4.pl:96
-----------------------------------------------------------

When I parse another Blast report I don't have this message. My Blast 
report must have something wrong, do you have an idea of what ?

Thanks,

Sincerely,


Laurence Amilhat


More information about the Bioperl-l mailing list