[Bioperl-l] base content

[Paulo Almeida]

Gabriele,

Is that from the Bio::EnsEMBL module? If it is, maybe this page can help 
you:

http://www.ensembl.org/Docs/Pdoc/ensembl/modules/Bio/EnsEMBL/RawContig.html#POD12

-Paulo Almeida

gabriele bucci wrote:

>Dears,
>can you tell me which is the way to manage an hash object resulting from
>the method get_base_count?
>Say I want to show in my output the %GC as in the subroutine below:
>
>sub main {             my $m=shift;
>                        $chr=$m->chr_name();
>                        $chr_start=$m->chr_start();
>                        $chr_end=$m->chr_end();
>                        $slice_length=$m->length();
>                        $slice_GC=$slice->get_base_count('%gc');
>                        $sliceGC=$slice_GC->???;
>                        return
>"$LIBclo\t$chr\t$chr_start\t$chr_end\t$slice_length\t$sliceGC\t";}
>
>Thanks
>