[Bioperl-l]ABI.pm and .ab1 files

[Malay]

Here is a way to do this out of the BioPerl:

Download and istall ABI.pm

http://cpan.uwinnipeg.ca/cpan/authors/id/M/MA/MALAY/ABI-0.01.tar.gz

use ABI;

my $abi = ABI->new(-file=>"mysequence.abi");
my $seq = $abi->get_sequence(); # To get the sequence
my @trace_a = $abi->get_trace("A"); # Get the raw traces for "A"
my @trace_g = $abi->get_trace("G"); # Get the raw traces for "G"
my @base_calls = $abi->get_base_calls(); # Get the base calls

Malay
malay at mail.nih.gov