[Bioperl-l] Trouble installing bioperl-ext /
Bio::SeqIO::staden::read
Barry Moore
barry.moore at genetics.utah.edu
Thu Apr 1 13:02:01 EST 2004
I want to use Bio::SeqIO::staden::read to get at the sequence data
directly from an abi output file. Assuming that I've choosen the
correct tool...? I'm having trouble installing bioperl-ext-1.4 and
here's the details of the problem.
I'm running RedHat 9, and BioPerl 1.4. I have Inline::C and
Inline::MakeMaker installed. I've installed io-lib-1.8.11 from source
that I aquired from the Staden ftp site. That seemed to go well with no
errors (at least not that I picked up). The installation was missing
os.h (as noted in the bioperl-ext README), so I copied it from the
downloaded package into /usr/local/include. I've run Makefile.PL and
tried to install all of bioperl-ext, and just the Bio::SeqIO::staden
portion. Running Makefile.PL appears to run happily, but running make
generates a lot of errors (pasted at the end). My specific questions are:
At the end of the make errors it suggests that, "To debug the problem,
cd to the build directory, and inspect the output files." I've looked
at all the files in the build directory that the error message specified
(The build directory was:
/home/bmoore/bioperl-ext-1.4/Bio/SeqIO/staden/_Inline/build/Bio/SeqIO/staden/read),
and none of it meant much to me (I'm clearly not a developer). Should
I be getting debugging clues out of those files, and if so, what?
At the end of the installation instructions for Bio::SeqIO::staden::read
it says, "A failed compilation is most likely due to an incomplete
io_lib installation; make sure that all the required io_lib ".h" files
are in place." How do I determine what ".h" files are required in
io_lib? I currently have the following:
abi.h compression.h misc.h scf_extras.h traceType.h
alf.h error.h open_trace_file.h scf.h translate.h
array.h expFileIO.h os.h seqIOABI.h xalloc.h
calc_crc.h fpoint.h plain.h seqIOCTF.h ztr.h
compress.h mach-io.h Read.h tar_format.h
Thanks for any help,
Barry
--------------------------------------------------------------------------------------------------------------
Makefile.PL output:
[root at Tatshenshini staden]# perl Makefile.PL
Found Staden io_lib "libread" in /usr/local/lib ...
Automatically using the Read.h found in /usr/local/include/io_lib ...
Writing Makefile for Bio::SeqIO::staden::read
make output:
[root at Tatshenshini staden]# make
cp read.pm blib/lib/Bio/SeqIO/staden/read.pm
/usr/bin/perl -Mblib -MInline=NOISY,_INSTALL_ -MBio::SeqIO::staden::read
-e1 0.0
1 blib/arch
Starting Build Prepocess Stage
Finished Build Prepocess Stage
Starting Build Parse Stage
Finished Build Parse Stage
Starting Build Glue 1 Stage
Finished Build Glue 1 Stage
Starting Build Glue 2 Stage
Finished Build Glue 2 Stage
Starting Build Glue 3 Stage
Finished Build Glue 3 Stage
Starting Build Compile Stage
Starting "perl Makefile.PL" Stage
Writing Makefile for Bio::SeqIO::staden::read
Finished "perl Makefile.PL" Stage
Starting "make" Stage
make[1]: Entering directory
`/home/bmoore/bioperl-ext-1.4/Bio/SeqIO/staden/_Inli
ne/build/Bio/SeqIO/staden/read'
/usr/bin/perl /usr/lib/perl5/5.8.0/ExtUtils/xsubpp -typemap
/usr/lib/perl5/5.8.
0/ExtUtils/typemap read.xs > read.xsc && mv read.xsc read.c
gcc -c -I/home/bmoore/bioperl-ext-1.4/Bio/SeqIO/staden
-I/usr/local/include/io_
lib -D_REENTRANT -D_GNU_SOURCE -DTHREADS_HAVE_PIDS -DDEBUGGING
-fno-strict-alias
ing -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64
-I/usr/inclu
de/gdbm -O2 -march=i386 -mcpu=i686 -g -DVERSION=\"0.01\"
-DXS_VERSION=\"0.01\"
-fPIC "-I/usr/lib/perl5/5.8.0/i386-linux-thread-multi/CORE" read.c
In file included from /usr/local/include/io_lib/Read.h:43,
from read.xs:5:
/usr/local/include/io_lib/os.h:9:1: warning: "INT_MAX" redefined
In file included from /usr/include/sys/param.h:22,
from
/usr/lib/perl5/5.8.0/i386-linux-thread-multi/CORE/perl.h:4
37,
from read.xs:2:
/usr/lib/gcc-lib/i386-redhat-linux/3.2.2/include/limits.h:65:1: warning:
this is
the location of the previous definition
In file included from /usr/local/include/io_lib/Read.h:43,
from read.xs:5:
/usr/local/include/io_lib/os.h:10:1: warning: "SHRT_MAX" redefined
In file included from /usr/include/sys/param.h:22,
from
/usr/lib/perl5/5.8.0/i386-linux-thread-multi/CORE/perl.h:4
37,
from read.xs:2:
/usr/lib/gcc-lib/i386-redhat-linux/3.2.2/include/limits.h:56:1: warning:
this is
the location of the previous definition
In file included from /usr/local/include/io_lib/Read.h:43,
from read.xs:5:
/usr/local/include/io_lib/os.h:24:4: #error No 2-byte integer type found.
/usr/local/include/io_lib/os.h:34:4: #error No 4-byte integer type found.
In file included from /usr/local/include/io_lib/Read.h:43,
from read.xs:5:
/usr/local/include/io_lib/os.h:40: parse error before "int_2"
/usr/local/include/io_lib/os.h:40: warning: data definition has no type
or stora
ge class
/usr/local/include/io_lib/os.h:41: parse error before "uint_2"
/usr/local/include/io_lib/os.h:41: warning: data definition has no type
or stora
ge class
/usr/local/include/io_lib/os.h:42: parse error before "int_4"
/usr/local/include/io_lib/os.h:42: warning: data definition has no type
or stora
ge class
/usr/local/include/io_lib/os.h:43: parse error before "uint_4"
/usr/local/include/io_lib/os.h:43: warning: data definition has no type
or stora
ge class
/usr/local/include/io_lib/os.h:46: parse error before "f_int"
/usr/local/include/io_lib/os.h:46: warning: data definition has no type
or stora
ge class
/usr/local/include/io_lib/os.h:47: parse error before "f_implicit"
/usr/local/include/io_lib/os.h:47: warning: data definition has no type
or stora
ge class
/usr/local/include/io_lib/os.h:51: parse error before "int_f"
/usr/local/include/io_lib/os.h:51: warning: data definition has no type
or stora
ge class
/usr/local/include/io_lib/os.h:52: parse error before "int_fl"
/usr/local/include/io_lib/os.h:52: warning: data definition has no type
or stora
ge class
In file included from /usr/local/include/io_lib/Read.h:44,
from read.xs:5:
/usr/local/include/io_lib/scf.h:79: parse error before "uint_4"
/usr/local/include/io_lib/scf.h:79: warning: no semicolon at end of
struct or un
ion
/usr/local/include/io_lib/scf.h:80: warning: data definition has no type
or stor
age class
/usr/local/include/io_lib/scf.h:81: parse error before "samples_offset"
/usr/local/include/io_lib/scf.h:81: warning: data definition has no type
or stor
age class
/usr/local/include/io_lib/scf.h:82: parse error before "bases"
/usr/local/include/io_lib/scf.h:82: warning: data definition has no type
or stor
age class
/usr/local/include/io_lib/scf.h:83: parse error before "bases_left_clip"
/usr/local/include/io_lib/scf.h:83: warning: data definition has no type
or stor
age class
/usr/local/include/io_lib/scf.h:84: parse error before "bases_right_clip"
/usr/local/include/io_lib/scf.h:84: warning: data definition has no type
or stor
age class
/usr/local/include/io_lib/scf.h:85: parse error before "bases_offset"
/usr/local/include/io_lib/scf.h:85: warning: data definition has no type
or stor
age class
/usr/local/include/io_lib/scf.h:86: parse error before "comments_size"
/usr/local/include/io_lib/scf.h:86: warning: data definition has no type
or stor
age class
/usr/local/include/io_lib/scf.h:87: parse error before "comments_offset"
/usr/local/include/io_lib/scf.h:87: warning: data definition has no type
or stor
age class
/usr/local/include/io_lib/scf.h:89: parse error before "sample_size"
/usr/local/include/io_lib/scf.h:89: warning: data definition has no type
or stor
age class
/usr/local/include/io_lib/scf.h:90: parse error before "code_set"
/usr/local/include/io_lib/scf.h:90: warning: data definition has no type
or stor
age class
/usr/local/include/io_lib/scf.h:91: parse error before "private_size"
/usr/local/include/io_lib/scf.h:91: warning: data definition has no type
or stor
age class
/usr/local/include/io_lib/scf.h:92: parse error before "private_offset"
/usr/local/include/io_lib/scf.h:92: warning: data definition has no type
or stor
age class
/usr/local/include/io_lib/scf.h:93: parse error before "spare"
/usr/local/include/io_lib/scf.h:93: warning: data definition has no type
or stor
age class
/usr/local/include/io_lib/scf.h:94: parse error before '}' token
/usr/local/include/io_lib/scf.h:94: warning: data definition has no type
or stor
age class
/usr/local/include/io_lib/scf.h:110: parse error before "uint_2"
/usr/local/include/io_lib/scf.h:110: warning: no semicolon at end of
struct or u
nion
/usr/local/include/io_lib/scf.h:111: warning: data definition has no
type or sto
rage class
/usr/local/include/io_lib/scf.h:112: parse error before "sample_G"
/usr/local/include/io_lib/scf.h:112: warning: data definition has no
type or sto
rage class
/usr/local/include/io_lib/scf.h:113: parse error before "sample_T"
/usr/local/include/io_lib/scf.h:113: warning: data definition has no
type or sto
rage class
/usr/local/include/io_lib/scf.h:114: warning: data definition has no
type or sto
rage class
/usr/local/include/io_lib/scf.h:120: parse error before "uint_4"
/usr/local/include/io_lib/scf.h:120: warning: no semicolon at end of
struct or u
nion
/usr/local/include/io_lib/scf.h:126: conflicting types for `spare'
/usr/local/include/io_lib/scf.h:93: previous declaration of `spare'
/usr/local/include/io_lib/scf.h:127: parse error before '}' token
/usr/local/include/io_lib/scf.h:127: warning: data definition has no
type or sto
rage class
/usr/local/include/io_lib/scf.h:140: parse error before "Header"
/usr/local/include/io_lib/scf.h:140: warning: no semicolon at end of
struct or u
nion
/usr/local/include/io_lib/scf.h:143: parse error before "Samples2"
/usr/local/include/io_lib/scf.h:143: warning: no semicolon at end of
struct or u
nion
/usr/local/include/io_lib/scf.h:144: warning: data definition has no
type or sto
rage class
/usr/local/include/io_lib/scf.h:145: parse error before '*' token
/usr/local/include/io_lib/scf.h:145: conflicting types for `bases'
/usr/local/include/io_lib/scf.h:82: previous declaration of `bases'
/usr/local/include/io_lib/scf.h:145: warning: data definition has no
type or sto
rage class
/usr/local/include/io_lib/scf.h:148: parse error before '}' token
/usr/local/include/io_lib/scf.h:148: warning: data definition has no
type or sto
rage class
/usr/local/include/io_lib/scf.h:167: parse error before "Header"
/usr/local/include/io_lib/scf.h:199: parse error before "Samples2"
/usr/local/include/io_lib/scf.h:207: parse error before "Samples2"
/usr/local/include/io_lib/scf.h:215: parse error before "Samples2"
/usr/local/include/io_lib/scf.h:223: parse error before "Bases"
/usr/local/include/io_lib/scf.h:231: parse error before "Bases"
/usr/local/include/io_lib/scf.h:239: parse error before "Bases"
/usr/local/include/io_lib/scf.h:258: parse error before '*' token
/usr/local/include/io_lib/scf.h:258: warning: data definition has no
type or sto
rage class
/usr/local/include/io_lib/scf.h:259: parse error before '*' token
/usr/local/include/io_lib/scf.h:259: warning: data definition has no
type or sto
rage class
/usr/local/include/io_lib/scf.h:273: parse error before "Header"
/usr/local/include/io_lib/scf.h:305: parse error before "Samples2"
/usr/local/include/io_lib/scf.h:313: parse error before "Samples2"
/usr/local/include/io_lib/scf.h:321: parse error before "Samples2"
/usr/local/include/io_lib/scf.h:329: parse error before "Bases"
/usr/local/include/io_lib/scf.h:337: parse error before "Bases"
/usr/local/include/io_lib/scf.h:345: parse error before "Bases"
/usr/local/include/io_lib/scf.h:370: parse error before '*' token
/usr/local/include/io_lib/scf.h:371: parse error before '*' token
/usr/local/include/io_lib/scf.h:407: parse error before '*' token
/usr/local/include/io_lib/scf.h:408: warning: data definition has no
type or sto
rage class
/usr/local/include/io_lib/scf.h:413: parse error before '*' token
/usr/local/include/io_lib/scf.h:432: parse error before "samples"
In file included from read.xs:5:
/usr/local/include/io_lib/Read.h:93: parse error before "TRACE"
/usr/local/include/io_lib/Read.h:93: warning: data definition has no
type or sto
rage class
/usr/local/include/io_lib/Read.h:104: parse error before "TRACE"
/usr/local/include/io_lib/Read.h:104: warning: no semicolon at end of
struct or
union
/usr/local/include/io_lib/Read.h:105: warning: data definition has no
type or st
orage class
/usr/local/include/io_lib/Read.h:106: parse error before '*' token
/usr/local/include/io_lib/Read.h:106: warning: data definition has no
type or st
orage class
/usr/local/include/io_lib/Read.h:107: parse error before '*' token
/usr/local/include/io_lib/Read.h:107: warning: data definition has no
type or st
orage class
/usr/local/include/io_lib/Read.h:108: parse error before "maxTraceVal"
/usr/local/include/io_lib/Read.h:108: warning: data definition has no
type or st
orage class
/usr/local/include/io_lib/Read.h:111: conflicting types for `base'
/usr/local/include/io_lib/scf.h:125: previous declaration of `base'
/usr/local/include/io_lib/Read.h:112: parse error before '*' token
/usr/local/include/io_lib/Read.h:112: warning: data definition has no
type or st
orage class
/usr/local/include/io_lib/Read.h:122: conflicting types for `prob_A'
/usr/local/include/io_lib/scf.h:121: previous declaration of `prob_A'
/usr/local/include/io_lib/Read.h:123: conflicting types for `prob_C'
/usr/local/include/io_lib/scf.h:122: previous declaration of `prob_C'
/usr/local/include/io_lib/Read.h:124: conflicting types for `prob_G'
/usr/local/include/io_lib/scf.h:123: previous declaration of `prob_G'
/usr/local/include/io_lib/Read.h:125: conflicting types for `prob_T'
/usr/local/include/io_lib/scf.h:124: previous declaration of `prob_T'
/usr/local/include/io_lib/Read.h:134: parse error before '}' token
/usr/local/include/io_lib/Read.h:134: warning: data definition has no
type or st
orage class
/usr/local/include/io_lib/Read.h:154: parse error before '*' token
/usr/local/include/io_lib/Read.h:154: warning: data definition has no
type or st
orage class
/usr/local/include/io_lib/Read.h:155: parse error before '*' token
/usr/local/include/io_lib/Read.h:155: warning: data definition has no
type or st
orage class
/usr/local/include/io_lib/Read.h:166: parse error before "Read"
/usr/local/include/io_lib/Read.h:167: parse error before "Read"
/usr/local/include/io_lib/Read.h:178: parse error before '*' token
/usr/local/include/io_lib/Read.h:178: warning: data definition has no
type or st
orage class
/usr/local/include/io_lib/Read.h:184: parse error before '*' token
/usr/local/include/io_lib/Read.h:199: parse error before '*' token
/usr/local/include/io_lib/Read.h:199: parse error before '*' token
/usr/local/include/io_lib/Read.h:199: warning: data definition has no
type or st
orage class
/usr/local/include/io_lib/Read.h:205: parse error before '*' token
/usr/local/include/io_lib/Read.h:205: warning: data definition has no
type or st
orage class
/usr/local/include/io_lib/Read.h:206: parse error before '*' token
/usr/local/include/io_lib/Read.h:206: warning: data definition has no
type or st
orage class
/usr/local/include/io_lib/Read.h:207: parse error before "Read"
/usr/local/include/io_lib/Read.h:208: parse error before "Read"
/usr/local/include/io_lib/Read.h:210: parse error before "Read"
/usr/local/include/io_lib/Read.h:211: parse error before "Read"
/usr/local/include/io_lib/Read.h:212: parse error before '*' token
/usr/local/include/io_lib/Read.h:212: warning: data definition has no
type or st
orage class
/usr/local/include/io_lib/Read.h:213: parse error before '*' token
/usr/local/include/io_lib/Read.h:213: warning: data definition has no
type or st
orage class
/usr/local/include/io_lib/Read.h:215: parse error before "Read"
/usr/local/include/io_lib/Read.h:216: parse error before "Read"
/usr/local/include/io_lib/Read.h:217: parse error before '*' token
/usr/local/include/io_lib/Read.h:217: warning: data definition has no
type or st
orage class
/usr/local/include/io_lib/Read.h:218: parse error before '*' token
/usr/local/include/io_lib/Read.h:218: warning: data definition has no
type or st
orage class
/usr/local/include/io_lib/Read.h:220: parse error before '*' token
/usr/local/include/io_lib/Read.h:220: warning: data definition has no
type or st
orage class
/usr/local/include/io_lib/Read.h:221: parse error before '*' token
/usr/local/include/io_lib/Read.h:221: warning: data definition has no
type or st
orage class
/usr/local/include/io_lib/Read.h:222: parse error before "Read"
/usr/local/include/io_lib/Read.h:223: parse error before "Read"
In file included from /usr/local/include/io_lib/translate.h:20,
from /usr/local/include/io_lib/Read.h:227,
from read.xs:5:
/usr/local/include/io_lib/expFileIO.h:181: parse error before '*' token
/usr/local/include/io_lib/expFileIO.h:182: parse error before '*' token
/usr/local/include/io_lib/expFileIO.h:204: parse error before "f_implicit"
/usr/local/include/io_lib/expFileIO.h:232: parse error before "f_implicit"
/usr/local/include/io_lib/expFileIO.h:252: parse error before "expopn_"
/usr/local/include/io_lib/expFileIO.h:252: parse error before "f_implicit"
/usr/local/include/io_lib/expFileIO.h:252: warning: data definition has
no type
or storage class
/usr/local/include/io_lib/expFileIO.h:257: parse error before '*' token
/usr/local/include/io_lib/expFileIO.h:262: parse error before "expri_"
/usr/local/include/io_lib/expFileIO.h:262: parse error before '*' token
/usr/local/include/io_lib/expFileIO.h:262: warning: data definition has
no type
or storage class
/usr/local/include/io_lib/expFileIO.h:268: parse error before "exprr_"
/usr/local/include/io_lib/expFileIO.h:268: parse error before '*' token
/usr/local/include/io_lib/expFileIO.h:268: warning: data definition has
no type
or storage class
/usr/local/include/io_lib/expFileIO.h:274: parse error before "exprsa_"
/usr/local/include/io_lib/expFileIO.h:274: parse error before '*' token
/usr/local/include/io_lib/expFileIO.h:274: warning: data definition has
no type
or storage class
/usr/local/include/io_lib/expFileIO.h:280: parse error before "exprs_"
/usr/local/include/io_lib/expFileIO.h:280: parse error before '*' token
/usr/local/include/io_lib/expFileIO.h:280: warning: data definition has
no type
or storage class
/usr/local/include/io_lib/expFileIO.h:286: parse error before "expwi_"
/usr/local/include/io_lib/expFileIO.h:286: parse error before '*' token
/usr/local/include/io_lib/expFileIO.h:286: warning: data definition has
no type
or storage class
/usr/local/include/io_lib/expFileIO.h:292: parse error before "expwr_"
/usr/local/include/io_lib/expFileIO.h:292: parse error before '*' token
/usr/local/include/io_lib/expFileIO.h:292: warning: data definition has
no type
or storage class
/usr/local/include/io_lib/expFileIO.h:299: parse error before "expwsa_"
/usr/local/include/io_lib/expFileIO.h:299: parse error before '*' token
/usr/local/include/io_lib/expFileIO.h:299: warning: data definition has
no type
or storage class
/usr/local/include/io_lib/expFileIO.h:307: parse error before "expws_"
/usr/local/include/io_lib/expFileIO.h:307: parse error before '*' token
/usr/local/include/io_lib/expFileIO.h:307: warning: data definition has
no type
or storage class
/usr/local/include/io_lib/expFileIO.h:319: parse error before "f_int"
/usr/local/include/io_lib/expFileIO.h:324: parse error before "exper_"
/usr/local/include/io_lib/expFileIO.h:324: parse error before "f_int"
/usr/local/include/io_lib/expFileIO.h:324: warning: data definition has
no type
or storage class
In file included from /usr/local/include/io_lib/Read.h:227,
from read.xs:5:
/usr/local/include/io_lib/translate.h:30: parse error before '*' token
/usr/local/include/io_lib/translate.h:30: parse error before '*' token
/usr/local/include/io_lib/translate.h:30: warning: data definition has
no type o
r storage class
/usr/local/include/io_lib/translate.h:40: parse error before '*' token
/usr/local/include/io_lib/translate.h:40: parse error before '*' token
/usr/local/include/io_lib/translate.h:40: warning: data definition has
no type o
r storage class
/usr/local/include/io_lib/translate.h:50: parse error before '*' token
/usr/local/include/io_lib/translate.h:79: parse error before '*' token
/usr/local/include/io_lib/translate.h:90: parse error before '*' token
/usr/local/include/io_lib/translate.h:90: warning: data definition has
no type o
r storage class
read.xs: In function `staden_write_trace':
read.xs:9: invalid operands to binary *
read.xs:15: invalid lvalue in assignment
read.xs:16: request for member `base' in something not a structure or union
read.xs:18: request for member `ident' in something not a structure or union
read.xs:21: request for member `ident' in something not a structure or union
read.xs:23: request for member `info' in something not a structure or union
read.xs:26: request for member `info' in something not a structure or union
read.xs:28: request for member `format' in something not a structure or
union
read.xs:29: request for member `leftCutoff' in something not a structure
or unio
n
read.xs:30: request for member `rightCutoff' in something not a
structure or uni
on
read.xs:32: warning: assignment from incompatible pointer type
read.xs:38: request for member `base' in something not a structure or union
read.xs:41: request for member `prob_A' in something not a structure or
union
read.xs:45: request for member `prob_C' in something not a structure or
union
read.xs:49: request for member `prob_G' in something not a structure or
union
read.xs:53: request for member `prob_T' in something not a structure or
union
read.xs:58: request for member `prob_A' in something not a structure or
union
read.xs:58: request for member `prob_C' in something not a structure or
union
read.xs:59: request for member `prob_G' in something not a structure or
union
read.xs:59: request for member `prob_T' in something not a structure or
union
read.xs:62: request for member `prob_A' in something not a structure or
union
read.xs:62: request for member `prob_C' in something not a structure or
union
read.xs:63: request for member `prob_G' in something not a structure or
union
read.xs:63: request for member `prob_T' in something not a structure or
union
read.xs: In function `staden_read_trace':
read.xs:76: invalid operands to binary *
read.xs:81: invalid lvalue in assignment
read.xs:83: parse error before ')' token
read.xs:88: request for member `leftCutoff' in something not a structure
or unio
n
read.xs:90: request for member `rightCutoff' in something not a
structure or uni
on
read.xs:91: request for member `NBases' in something not a structure or
union
read.xs:91: request for member `NBases' in something not a structure or
union
read.xs:93: request for member `base' in something not a structure or union
read.xs:94: request for member `prob_A' in something not a structure or
union
read.xs:94: request for member `prob_C' in something not a structure or
union
read.xs:95: request for member `prob_G' in something not a structure or
union
read.xs:95: request for member `prob_T' in something not a structure or
union
read.xs:144: request for member `ident' in something not a structure or
union
read.xs:145: request for member `info' in something not a structure or union
make[1]: *** [read.o] Error 1
make[1]: Leaving directory
`/home/bmoore/bioperl-ext-1.4/Bio/SeqIO/staden/_Inlin
e/build/Bio/SeqIO/staden/read'
A problem was encountered while attempting to compile and install your
Inline
C code. The command that failed was:
make
The build directory was:
/home/bmoore/bioperl-ext-1.4/Bio/SeqIO/staden/_Inline/build/Bio/SeqIO/staden/read
To debug the problem, cd to the build directory, and inspect the output
files.
at -e line 0
INIT failed--call queue aborted.
make: *** [read.inl] Error 2
More information about the Bioperl-l
mailing list