[Bioperl-l] Bio::Serach::Result::ResultI

[Jason Stajich]

Result::BlastResult IS A Result::ResultI -- see biodesign.pod for
description of object-oriented programming and bioperl.

Anything you can do to a ResultI object yout can do to a BlastResult
object, and more.

-jason

On Mon, 26 Apr 2004, Kan Nobuta wrote:

> Hi all,
>
> I (think) installed bioperl on Mac OSX 10.3.  I wrote a short script
> (see below) and tested if the installation was successful or not.
>
> my $in = Bio::SeqIO->new('-file'=>'./ATH1.pep', '-format'=>'Fasta');
> while (my $seq = $in->next_seq() ) {
>      my @params = ('program'=>'blastp', 'outfile'=>'blast.out',
> 		  'database'=>'./ATH1.pep' );
>
>      my $factory = Bio::Tools::Run::StandAloneBlast->new(@params);
>
>      my $blast_report = $factory->blastall($seq);
>      print ref($blast_report), "\n";
>
>      my $result = $blast_report->next_result;
>      print ref($result), "\n";
> }
>
>
> I think "next_result" should return "Bio::Serach::Result::ResultI" but
> my script returns  "Bio::Serach::Result::BlastResult."  Could anyone
> help me to fix this problem?  I would greatly appreciate any help.
>
> Thank you in advance.
>
> Best wishes,
>
> Kan
>
>
>
>
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--
Jason Stajich
Duke University
jason at cgt.mc.duke.edu