[Bioperl-l] parsing blast reports- co-ordinate of hit

Nandita Mullapudi nandita at uga.edu
Thu Apr 29 17:01:07 EDT 2004


Hi all,
I need to extract from zillion blast reports the numerical 
co-ordinates of the query as well as the hit. Am using Bio::SearchIO 
and $hsp->start  and $hsp->end get me the co-ordinates of the query, 
but how do i get the corresponding co-ordinates of the hit?
thanks,
-Nandita


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