2001-June Archives by Thread

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Starting: Fri Jun 1 12:01:50 2001
Ending: Sat Jun 30 22:47:45 2001
Messages: 181

• [Bioperl-l] Naming BoF at BOSC'01   Andrew Dalke
• [Bioperl-l] annotating existing Seq objects   Stephen Henderson
  • [Bioperl-l] annotating existing Seq objects   Jason Stajich
• [Bioperl-l] a project idea   Jason Stajich
  • [Bioperl-l] a project idea   Juha Muilu
    • [Bioperl-l] a project idea   Martin Senger
      • [Bioperl-l] a project idea   Heikki Lehvaslaiho
      • [Bioperl-l] a project idea   Jason Stajich
• [Bioperl-l] Bio::SeqIO::scf   Brian Desany
• [Bioperl-l] Bio::Tools::BPbl2seq   peter schattner
• [Bioperl-l] Consed alignments   Charles Hauser
• [Bioperl-l] SimpleAlign and character sets   Heikki Lehvaslaiho
• [Bioperl-l] boulder batch retrieve error   hao chen
• [Bioperl-l] Re: Ready!   Jason Stajich
• [Bioperl-l] Jitterbug Issue 943   Roger Hall
• [Bioperl-l] Bio::SeqIO::fasta id printing   Jason Stajich
  • [Bioperl-l] Bio::SeqIO::fasta id printing   Hilmar Lapp
  • [Bioperl-l] Bio::SeqIO::fasta id printing   Ewan Birney
• [Bioperl-l] Re: [Bioperl-guts-l] Notification: incoming/974   Hilmar Lapp
  • [Bioperl-l] Re: [Bioperl-guts-l] Notification: incoming/974   Saurabh D. Patel
    • [Bioperl-l] no leading digit in expect values < 1e-99   Hilmar Lapp
      • [Bioperl-l] no leading digit in expect values < 1e-99   Saurabh D. Patel
    • [Bioperl-l] Re: [Bioperl-guts-l] Notification: incoming/974   Roger Hall
• [Bioperl-l] Jitterbugs 955 and 943   Roger Hall
• [Bioperl-l] new ssh keys   Jason Stajich
• [Bioperl-l] call for X-platform tests   Jason Stajich
  • [Bioperl-l] call for X-platform tests   Todd Richmond
    • [Bioperl-l] 0.7.1 X-platform results for OpenBSD 2.8 i386 (AlignIO failing)   chris dagdigian
      • [Bioperl-l] 0.7.1 X-platform results for OpenBSD 2.8 i386 (AlignIO failing)   Heikki Lehvaslaiho
      • [Bioperl-l] 0.7.1 X-platform results for OpenBSD 2.8 i386 (AlignIO failing)   Jason Stajich
      • [Bioperl-l] 0.7.1 X-platform results for OpenBSD 2.8 i386 (AlignIO failing)   Heikki Lehvaslaiho
• [Bioperl-l] bioperl-db: rich queries implementation   Chris Mungall
  • [Bioperl-l] bioperl-db: rich queries implementation   Elia Stupka
    • [Bioperl-l] bioperl-db: rich queries implementation   Chris Mungall
    • [Bioperl-l] bioperl-db: rich queries implementation   Matthew Pocock
• [Bioperl-l] Bio::SimpleAlign::order   Jason Stajich
  • [Bioperl-l] Bio::SimpleAlign::order   Heikki Lehvaslaiho
• [Bioperl-l] t/BPpsilite fails   James Gilbert
  • [Bioperl-l] t/BPpsilite fails   James Gilbert
    • [Bioperl-l] t/BPpsilite fails   Jason Stajich
      • [Bioperl-l] t/BPpsilite fails   James Gilbert
• [Bioperl-l] (no subject)   Parminder Kang
  • [Bioperl-l] (no subject)   Peter Schattner
• [Bioperl-l] '?', a valid sequence character   Heikki Lehvaslaiho
• [Bioperl-l] qr// in tests   James Gilbert
  • [Bioperl-l] qr// in tests   Jason Stajich
    • [Bioperl-l] qr// in tests   James Gilbert
• [Bioperl-l] question about Bio::DB::GenBank   Bob Mangold
  • [Bioperl-l] question about Bio::DB::GenBank   Jason Stajich
    • [Bioperl-l] question about Bio::DB::GenBank   Alan Robinson
    • [Bioperl-l] question about Bio::DB::GenBank   Bob Mangold
      • [Bioperl-l] question about Bio::DB::GenBank   Jason Stajich
      • [Bioperl-l] question about Bio::DB::GenBank   Elia Stupka
• [Bioperl-l] LOCAL and STANDALONE BLAST   Parminder Kang
• [Bioperl-l] question about Bio::DB::GenBank   Alan Robinson
• [Bioperl-l] (no subject)   Parminder Kang
  • [Bioperl-l] (no subject)   Peter Schattner
• [Bioperl-l] ClustaW error   Heikki Lehvaslaiho
• [Bioperl-l] Questions on SEALS from NCBI   LIQING ZHANG
  • [Bioperl-l] Questions on SEALS from NCBI   Leonardo Marino-Ramirez
• [Bioperl-l] request for new feature types: Attn. esp. Hilmar and Ewan   Mark Wilkinson
  • [Bioperl-l] request for new feature types: Attn. esp. Hilmar and Ewan   Ewan Birney
    • [Bioperl-l] request for new feature types: Attn. esp. Hilmarand Ewan   Heikki Lehvaslaiho
      • [Bioperl-l] request for new feature types: Attn. esp. Hilmarand Ewan   Jason Stajich
• [Bioperl-l] flock   gert thijs
• [Bioperl-l] AlignIO modules for PHYLIP and NEXUS   Heikki Lehvaslaiho
• [Bioperl-l] Re: bug #949   Jason Stajich
  • [Bioperl-l] Re: bug #949   Roger Hall
    • [Bioperl-l] Re: bug #949   Jason Stajich
• [Bioperl-l] grail, grailexp test files   Jason Stajich
  • [Bioperl-l] grail, grailexp test files   Doug Hyatt
• [Bioperl-l] Bio::AlignIO::meme   Ben Berman
• [Bioperl-l] BioPerl installation on Solaris   Thomas, Daryl
  • [Bioperl-l] BioPerl installation on Solaris   Heikki Lehvaslaiho
• [Bioperl-l] Intron handling in Bio::SeqFeature   Rohan Fernandes
• [Bioperl-l] 0.7.1 tests; Bio::Index::* stuff   Ewan Birney
  • [Bioperl-l] 0.7.1 tests; Bio::Index::* stuff   Jason Stajich
• [Bioperl-l] question on license issue   J Landman
• [Bioperl-l] BioPerl installation on Solaris   Thomas, Daryl
• [Bioperl-l] orientations and alignments   Gregory Carl Kettler
• [Bioperl-l] candidate testing for 0.7.1   Jason Stajich
  • [Bioperl-l] candidate testing for 0.7.1   Heikki Lehvaslaiho
• [Bioperl-l] Consed.pm   Chad Matsalla
  • [Bioperl-l] Consed.pm   Ewan Birney
• [Bioperl-l] Index.t committed, tested; HMMER waiting   Ewan Birney
• [Bioperl-l] StandAloneBlast : 2 newbie questions   Alexandre Irrthum
  • [Bioperl-l] StandAloneBlast : 2 newbie questions   Peter Schattner
    • [Bioperl-l] StandAloneBlast : 2 newbie questions   Jason Stajich
      • [Bioperl-l] StandAloneBlast : 2 newbie questions   Ewan Birney
    • [Bioperl-l] Re: which param   Peter Schattner
  • [Bioperl-l] StandAloneBlast : 2 newbie questions   Jason Stajich
• [Bioperl-l] HMMER in on the branch   Ewan Birney
• [Bioperl-l] Main trunk tests failing (not serious)   Ewan Birney
  • [Bioperl-l] Main trunk tests failing (not serious)   Jason Stajich
• [Bioperl-l] error retrieving AF001282 from genbank   Hao Chen
  • [Bioperl-l] error retrieving AF001282 from genbank   Jason Stajich
• [Bioperl-l] microbug in Bio::SeqIO::fasta::next_primary_seq   Karger, Amir
  • [Bioperl-l] microbug in Bio::SeqIO::fasta::next_primary_seq   Aaron J Mackey
• [Bioperl-l] AlignIO problems   Stephen Henderson
  • [Bioperl-l] AlignIO problems   Heikki Lehvaslaiho
• [Bioperl-l] Consed.pm   Chad Matsalla
• [Bioperl-l] Bio::Tools::Blast update   Steve Chervitz
• [Bioperl-l] Interpro   David Block
  • [Bioperl-l] Interpro   Elia Stupka
• [Bioperl-l] how to determine if SeqFeature is attached to Sequence   Mark Wilkinson
  • [Bioperl-l] how to determine if SeqFeature is attached to Sequence   Ewan Birney
  • [Bioperl-l] how to determine if SeqFeature is attached to Sequence   Jason Stajich
    • [Bioperl-l] how to determine if SeqFeature is attached to Sequence   Ewan Birney
      • [Bioperl-l] how to determine if SeqFeature is attached to Sequence   Jason Stajich
      • [Bioperl-l] how to determine if SeqFeature is attached to Sequence   Mark Wilkinson
      • [Bioperl-l] how to determine if SeqFeature is attached to Sequence   Ewan Birney
      • [Bioperl-l] how to determine if SeqFeature is attached to Sequence   Hilmar Lapp
• [Bioperl-l] getting ready the v.0.7.1.   Heikki Lehvaslaiho
  • [Bioperl-l] getting ready the v.0.7.1.   Jason Stajich
    • [Bioperl-l] getting ready the v.0.7.1.   chris dagdigian
    • [Bioperl-l] getting ready the v.0.7.1.   Heikki Lehvaslaiho
      • [Bioperl-l] getting ready the v.0.7.1.   Heikki Lehvaslaiho
      • [Bioperl-l] Seq object creation - update?   Mark Wilkinson
      • [Bioperl-l] Seq object creation - update?   Elia Stupka
    • [Bioperl-l] getting ready the v.0.7.1.   Todd Richmond
• [Bioperl-l] 0.7.1 final stuff   chris dagdigian
• [Bioperl-l] 0.7.1 checklist   Jason Stajich
  • [Bioperl-l] 0.7.1 checklist   Ewan Birney
• [Bioperl-l] RE: :Tools::Genemark.pm   Fiers, M.W.E.J.
• [Bioperl-l] 0.7.1 last calls for errors   Jason Stajich
• [Bioperl-l] parsing DEFINITION field in GenBank entries?   Dave Lewis
• [Bioperl-l] Translating codons   Karger, Amir
  • [Bioperl-l] Translating codons   Heikki Lehvaslaiho
• [Bioperl-l] ok for 0.7.1 on my end   chris dagdigian
  • [Bioperl-l] ok for 0.7.1 on my end   Ewan Birney
    • [Bioperl-l] ok for 0.7.1 on my end   Jason Stajich
      • [Bioperl-l] ok for 0.7.1 on my end   Elia Stupka
      • [Bioperl-l] ok for 0.7.1 on my end   Ewan Birney
      • [Bioperl-l] ok for 0.7.1 on my end   Elia Stupka
• [Bioperl-l] Translating codons   Karger, Amir
  • [Bioperl-l] Translating codons : re-coded   Heikki Lehvaslaiho
• [Bioperl-l] Consed.pm documentation complete, please comment   Chad Matsalla
  • [Bioperl-l] Consed.pm documentation complete, please comment   Jason Stajich
• [Bioperl-l] FW: Hash table creator   Karger, Amir
  • [Bioperl-l] FW: Hash table creator   Heikki Lehvaslaiho
• [Bioperl-l] Bioperl 0.7.1   Ewan Birney
• [Bioperl-l] SeqIO cleanup   Jason Stajich
  • [Bioperl-l] SeqIO cleanup   Ewan Birney
    • [Bioperl-l] SeqIO cleanup   Jason Stajich
  • [Bioperl-l] SeqIO cleanup   Elia Stupka
    • [Bioperl-l] SeqIO cleanup   Jason Stajich
      • [Bioperl-l] SeqIO cleanup   Ewan Birney
      • [Bioperl-l] SeqIO cleanup   Jason Stajich
      • [Bioperl-l] SeqIO cleanup   Ewan Birney
• [Bioperl-l] not all sequence is created equal (base quality data)   Jason Stajich
  • [Bioperl-l] not all sequence is created equal (base quality data)   David Block
    • [Bioperl-l] not all sequence is created equal (base quality data)   Paul Gordon
• [Bioperl-l] not all sequence is created equal (base quality d ata)   Malcolm Cook
• [Bioperl-l] Input a BLAST report as a variable, using Blast.pm.   David He
• [Bioperl-l] problem with gcg and perl   Heikki Lehvaslaiho
• [Bioperl-l] translate() again   Heikki Lehvaslaiho
  • [Bioperl-l] translate() again   Heikki Lehvaslaiho
    • [Bioperl-l] translate() again   Ewan Birney
      • [Bioperl-l] translate() again   Hilmar Lapp
• [Bioperl-l] BIO2001 & I3C - comments?   Mark Wilkinson
  • [Bioperl-l] BIO2001 & I3C - comments?   chris dagdigian
• [Bioperl-l] SeqIO::swiss->write_seq   Karger, Amir
  • [Bioperl-l] SeqIO::swiss->write_seq   Elia Stupka
    • [Bioperl-l] SeqIO::swiss->write_seq   Jason Stajich
      • [Bioperl-l] SeqIO::swiss->write_seq   Elia Stupka
      • [Bioperl-l] SeqIO::swiss->write_seq   Ewan Birney
      • [Bioperl-l] SeqIO::swiss->write_seq   Jason Stajich
  • [Bioperl-l] SeqIO::swiss->write_seq   Ewan Birney
• [Bioperl-l] RE: not all sequence is created equal (base quality d   Brian Desany
  • [Bioperl-l] RE: not all sequence is created equal (base quality d   Jason Stajich
• [Bioperl-l] RE: not all sequence is created equal (base quali ty d   Malcolm Cook
• [Bioperl-l] Bio:SeqIO fasta   Stephen Baird
  • [Bioperl-l] Bio:SeqIO fasta   Jason Stajich
• [Bioperl-l] Bio:SeqIO fasta   Marc Logghe
• [Bioperl-l] SeqIO cleanup   Jason Stajich
  • [Bioperl-l] SeqIO cleanup   Jason Stajich
  • [Bioperl-l] SeqIO cleanup   Hilmar Lapp
• [Bioperl-l] RE: not all sequence is created equal   Chad Matsalla
  • [Bioperl-l] RE: not all sequence is created equal   Hilmar Lapp
• [Bioperl-l] Installing OS X dependencies   Steven Cannon
  • [Bioperl-l] Installing OS X dependencies   Chris Dagdigian

Last message date: Sat Jun 30 22:47:45 2001
Archived on: Sat Jun 30 17:41:03 2001

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