[Bioperl-l] ok for 0.7.1 on my end

Elia Stupka elia@ebi.ac.uk
Mon, 25 Jun 2001 17:45:14 +0100 (BST)


Hello there,

I am just actually hunting heavily a bug which seems to involve the way
locations create their FT location strings in the case of seqfeatures
withs subseqfeatures, it is dumping our features in a very messy way. I
thought it was an EnsEMBL problem, but I have now nailed that a very sane
set of seqfeatures goes in, and a very insane dump comes out.

In brief:

-a genscan prediction with multiple exons will dump with the join line
for all its exons and then duplicate the dump for each contained feature

-moreover the same type of feature in the join line will dump the end of
each complement as being the last (max_end) end coordinate

More in an hour or so...

elia

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