[Bioperl-l] SeqIO cleanup

Jason Stajich jason@chg.mc.duke.edu
Tue, 26 Jun 2001 14:13:37 -0400 (EDT)


oh right - my bad - so 'newFh' returns a GLOB while 'new' returns a
Bio::SeqIO, I get it. 

On Tue, 26 Jun 2001, Ewan Birney wrote:

> On Tue, 26 Jun 2001, Jason Stajich wrote:
> 
> > Is Bio::SeqIO - newFh() necessary anymore - don't we autocreate streams
> > now with Root::IO?
> 
> isn't newFh TIED as a real file handle allowing you to do the old
> 
>    while( <$seqio_input> ) {
> 	print "Id is ",$_->id,"\n";
> 	}
> 
> 
> 
> > 
> > Jason Stajich
> > jason@chg.mc.duke.edu
> > Center for Human Genetics
> > Duke University Medical Center 
> > http://www.chg.duke.edu/ 
> > 
> > 
> > _______________________________________________
> > Bioperl-l mailing list
> > Bioperl-l@bioperl.org
> > http://bioperl.org/mailman/listinfo/bioperl-l
> > 
> 
> -----------------------------------------------------------------
> Ewan Birney. Mobile: +44 (0)7970 151230, Work: +44 1223 494420
> <birney@ebi.ac.uk>. 
> -----------------------------------------------------------------
> 
> 

Jason Stajich
jason@chg.mc.duke.edu
Center for Human Genetics
Duke University Medical Center 
http://www.chg.duke.edu/