[Bioperl-l] Consed alignments

[Charles Hauser]

Greetings,

I am still a newby to all this, and thanks to Jason and others for 
taking the time to answer my questions.

As part of a web/EST database project, I would like to display the 
alignments from consed for individual contigs.  Does anyone have 
experience/suggestions for doing this?

Specifically;
  - how do you capture the alignment.
  - script to process 2-3k contigs per run (output a txt file or gif 
of the alignment).

As an prototype, I found on the Maize DB site something I would like 
to model after: 
http://gremlin3.zool.iastate.edu/cgi-bin/tree/ZMDB?name=TUC01-26-1.1&class=Sequence

regards,



-- 
Chuck