2002-June Archives by Date

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Starting: Sat Jun 1 05:34:20 2002
Ending: Sat Jun 29 20:15:08 2002
Messages: 252

• [Bioperl-l] Urgent Reply.   Elia Stupka
• [Bioperl-l] Urgent Reply.   chinonyere john.
• [Bioperl-l] Urgent Reply. / spam to open-bio lists   chris dagdigian
• [Bioperl-l] Urgent Reply. / spam to open-bio lists   Elia Stupka
• [Bioperl-l] zebrafish est database   james priest
• [Bioperl-l] meme   curious curious
• [Bioperl-l] zebrafish est database   Jason Stajich
• [Bioperl-l] meme   Elia Stupka
• [Bioperl-l] Re: [Bioperl-guts-l] Notification: incoming/1202   Jason Stajich
• [Bioperl-l] interesting ncbi fetch bug   Jason Stajich
• [Bioperl-l] NCBI newsgroup/mailing list   Robert Citek
• [Bioperl-l] meme   Tania Oh Wei Ling
• [Bioperl-l] meme   Elia Stupka
• [Bioperl-l] meme   Tania Oh Wei Ling
• [Bioperl-l] meme   Elia Stupka
• [Bioperl-l] 1.01 RC2   Jason Stajich
• [Bioperl-l] setting up cvs account   Simon Chan
• [Bioperl-l] setting up cvs account   chris dagdigian
• [Bioperl-l] minor annoyance in bioperl-1.1-RC2   chris dagdigian
• [Bioperl-l] minor annoyance in bioperl-1.1-RC2   Jason Stajich
• [Bioperl-l] testing bioperl 1.0.1 RC2 release on 'naked' HP-UX machines   chris dagdigian
• [Bioperl-l] 1.01 RC2   Leonardo Marino-Ramirez
• [Bioperl-l] 1.01 RC2   Jason Stajich
• [Bioperl-l] interesting ncbi fetch bug   Ewan Birney
• [Bioperl-l] accounts   Elia Stupka
• [Bioperl-l] online Python course for Bioinformatics   Katja Schuerer
• [Bioperl-l] Applying pairwise Smith-Waterman on nucleotide sequences?   Danny Yoo
• [Bioperl-l] Applying pairwise Smith-Waterman on nucleotide sequences?   Jason Stajich
• [Bioperl-l] how to catch exception error   Damien Mattei
• [Bioperl-l] how to catch exception error   Heikki Lehvaslaiho
• [Bioperl-l] how to catch exception error   Elia Stupka
• [Bioperl-l] Bio::Variation::SeqDiff, Bio::Variation::VariantI   Heikki Lehvaslaiho
• [Bioperl-l] Re: zebrafish est database   James Priest
• [Bioperl-l] BOSC2002 Schedule   Jason Stajich
• [Bioperl-l] PARSE GENBANK SEQUENCE FILES   Melissa L. Kimball
• [Bioperl-l] Please help me with the parameters for precise alignment   ze cheng
• [Bioperl-l] PARSE GENBANK SEQUENCE FILES   Jason Stajich
• [Bioperl-l] PARSE GENBANK SEQUENCE FILES   Jason Stajich
• [Bioperl-l] Genbank seq CODE   Melissa L. Kimball
• [Bioperl-l] Genbank seq CODE   Jason Stajich
• [Bioperl-l] PARSE GENBANK SEQUENCE FILES   Stefan Kirov
• [Bioperl-l] Retrieving genomic sequence remotely   Stefan Kirov
• [Bioperl-l] 1.0.1 preparing to release, 1.1 plans   Jason Stajich
• [Bioperl-l] 1.0.1 preparing to release, 1.1 plans   Heikki Lehvaslaiho
• [Bioperl-l] Re: PARSE GENBANK SEQUENCE FILES (Melissa L. Kimball)   darin.m.london@gsk.com
• [Bioperl-l] Parsing Blast Output   AUnderwood@PHLS.org.uk
• [Bioperl-l] Genbank seq CODE   Peter Kos
• [Bioperl-l] Parsing Blast Output   Wiepert, Mathieu
• [Bioperl-l] Parsing Blast Output   Wiepert, Mathieu
• [Bioperl-l] Parsing Blast Output   Brian Osborne
• [Bioperl-l] Bioperl 1.0.1 Released   Jason Stajich
• [Bioperl-l] Parsing Blast Output   AUnderwood@PHLS.org.uk
• [Bioperl-l] Parsing Blast Output   Jason Stajich
• [Bioperl-l] Organism name fetcher from Genbank   Ranni King
• [Bioperl-l] Finally coding...   Elia Stupka
• [Bioperl-l] Errors on Annotaion   Aun Ja
• [Bioperl-l] Added check   Elia Stupka
• [Bioperl-l] Added check   Kris Boulez
• [Bioperl-l] Added check   Elia Stupka
• [Bioperl-l] Fix for fasta loading into bioperl-db   Elia Stupka
• [Bioperl-l] Simple sequence assemblies   Elia Stupka
• [Bioperl-l] Versions!   Mick Watson
• [Bioperl-l] Versions!   Jason Stajich
• [Bioperl-l] Errors on Annotaion   Jason Stajich
• [Bioperl-l] Errors on Annotaion   Brian Osborne
• [Bioperl-l] Organism name fetcher from Genbank   Brian Osborne
• [Bioperl-l] Organism name fetcher from Genbank   Damien Mattei
• [Bioperl-l] Added check   David Block
• [Bioperl-l] Organism name fetcher from Genbank   Jason Stajich
• [Bioperl-l] UNIGENE news?   Stefan Kirov
• [Bioperl-l] Fix for fasta loading into bioperl-db   Hilmar Lapp
• [Bioperl-l] Fix for fasta loading into bioperl-db   Hilmar Lapp
• [Bioperl-l] Fix for fasta loading into bioperl-db   Elia Stupka
• [Bioperl-l] Fix for fasta loading into bioperl-db   Elia Stupka
• [Bioperl-l] Simple sequence assemblies   Hilmar Lapp
• [Bioperl-l] Simple sequence assemblies   Elia Stupka
• [Bioperl-l] Genbank Bioperl help   Ali Al-Shahib
• [Bioperl-l] Genbank Bioperl help   Stefan A Kirov
• [Bioperl-l] Re: Finally coding...   Chris Mungall
• [Bioperl-l] locuslink parser   ching@gnf.org
• [Bioperl-l] GMOD on top of biosql   Elia Stupka
• [Bioperl-l] Organism name fetcher from Genbank   Damien Mattei
• [Bioperl-l] protein usage   Eli Reuveni
• [Bioperl-l] Bio::Variation::SeqDiff, Bio::Variation::VariantI   Heikki Lehvaslaiho
• [Bioperl-l] Genbank Bioperl help   Brian Osborne
• [Bioperl-l] Eutils supported   Jason Stajich
• [Bioperl-l] Genbank Bioperl problem   Ali Al-Shahib
• [Bioperl-l] Genbank Bioperl problem   Stefan Kirov
• [Bioperl-l] Genbank Bioperl problem   Brian Osborne
• [Bioperl-l] [Bioperl-guts-l] Notification: incoming/1211 (fwd)   Jason Stajich
• [Bioperl-l] [Bioperl-guts-l] Notification: incoming/1210 (fwd)   Jason Stajich
• [Bioperl-l] cpan website not working   Alice Lu
• [Bioperl-l] NCBI website not working for saving sequence   Qunfeng Dong
• [Bioperl-l] bioperl-db: tests all fail   Hilmar Lapp
• [Bioperl-l] Bioperl 1.0.1 Released   Peter Kos
• [Bioperl-l] bioperl-db: tests all fail   Elia Stupka
• [Bioperl-l] bioperl-db: tests all fail   Elia Stupka
• [Bioperl-l] Firewall and Proxy   Peter Kos
• [Bioperl-l] Bioperl 1.0.1 Released   Jason Stajich
• [Bioperl-l] Firewall and Proxy   Jason Stajich
• [Bioperl-l] Intron and exon information   Lars G. T. Jorgensen
• [Bioperl-l] Intron and exon information   David Block
• [Bioperl-l] Intron and exon information   Lars G. T. Jorgensen
• [Bioperl-l] Intron and exon information   David Block
• [Bioperl-l] Intron and exon information   Jason Stajich
• [Bioperl-l] bioperl-db: tests all fail   Hilmar Lapp
• [Bioperl-l] bioperl-live Bio::DB::Registry.pm bug finding "/etc/bioinformatics/seqdatabase.ini" and suggestion for discovery of new database adaptors   Malcolm Cook
• [Bioperl-l] bioperl-db: tests all fail   Elia Stupka
• [Bioperl-l] Genbank Parsing Bug leads to discovery of strange behavior of Bio::Seq::primary_id()   CHALFANT_CHRIS_M@Lilly.com
• [Bioperl-l] bioperl-db: tests all fail   Hilmar Lapp
• [Bioperl-l] Re: [GMOD-devel] GMOD on top of biosql   Lincoln Stein
• [Bioperl-l] Genbank Parsing Bug leads to discovery of strange behavior ofBio::Seq::primary_id()   Hilmar Lapp
• [Bioperl-l] Intron and exon information   Hilmar Lapp
• [Bioperl-l] Intron and exon information   Jason Stajich
• [Bioperl-l] Intron and exon information   Hilmar Lapp
• [Bioperl-l] bioentry-qualifier-association   Hilmar Lapp
• [Bioperl-l] standards for wrapped exes   Jason Stajich
• [Bioperl-l] standards for wrapped exes   shawnh@worf.fugu-sg.org
• [Bioperl-l] bioperl-db: tests all fail   Elia Stupka
• [Bioperl-l] Re: [GMOD-devel] GMOD on top of biosql   Elia Stupka
• [Bioperl-l] EMBOSS ACD parsing   Heikki Lehvaslaiho
• [Bioperl-l] Call for lightning talks, BoFs at BOSC 2002   Jason Stajich
• [Bioperl-l] Getting started with Bio::TreeIO   Howard Ross
• [Bioperl-l] Getting started with Bio::TreeIO   Jason Stajich
• [Bioperl-l] about : Bio::DB::WebDBSeqI   chen xingyun
• [Bioperl-l] about : Bio::DB::WebDBSeqI   Elia Stupka
• [Bioperl-l] biosql schema oddities?   Elia Stupka
• [Bioperl-l] biosql odditties part 2   Elia Stupka
• [Bioperl-l] ehm...   Elia Stupka
• [Bioperl-l] RE: [Open-bio-l] biosql schema oddities?   Hilmar Lapp
• [Bioperl-l] Bio::Variation::SeqDiff, Bio::Variation::VariantI   Heikki Lehvaslaiho
• [Bioperl-l] Re: [GMOD-devel] GMOD on top of biosql   Lincoln Stein
• [Bioperl-l] Eutils supported   Lincoln Stein
• [Bioperl-l] accounts   Elia Stupka
• [Bioperl-l] Re: [Open-bio-l] accounts   Ewan Birney
• [Bioperl-l] Bioperl   k.kumar@biologie.hu-berlin.de
• [Bioperl-l] Megablast   BHurwitz@twt.com
• [Bioperl-l] Bio::Tools::Phylo::PAML::Codeml   Aaron J Mackey
• [Bioperl-l] Re: Bio::Tools::Phylo::PAML::Codeml   Jason Stajich
• [Bioperl-l] Re: Bio::Tools::Phylo::PAML::Codeml   Aaron J Mackey
• [Bioperl-l] Re: Bio::Tools::Phylo::PAML::Codeml   Jason Stajich
• [Bioperl-l] porting from BlastXXX to GenericXXX   Jason Stajich
• [Bioperl-l] Can't find Carp/Heavy.pm using BPbl2seq module   Gisel, Andreas
• [Bioperl-l] Entrez queries   Lincoln Stein
• [Bioperl-l] underscores in names from AlignIO::phylip.pm   Aaron J Mackey
• [Bioperl-l] Re: Bio::Tools::Phylo::PAML::Codeml   Aaron J Mackey
• [Bioperl-l] Re: Bio::Tools::Phylo::PAML::Codeml   Jason Stajich
• [Bioperl-l] new cvs module bioperl-runnable   Jason Stajich
• [Bioperl-l] XML BLAST parsing & accessions   T.D. Houfek
• [Bioperl-l] potential Bio::SeqIO/ addition ? Inline::C usage??   Aaron J Mackey
• [Bioperl-l] potential Bio::SeqIO/ addition ? Inline::C usage??   Aaron J Mackey
• [Bioperl-l] XML BLAST parsing & accessions   Jason Stajich
• [Bioperl-l] new cvs module bioperl-runnable   Elia Stupka
• [Bioperl-l] new cvs module bioperl-runnable   Ewan Birney
• [Bioperl-l] potential Bio::SeqIO/ addition ? Inline::C usage??   Ewan Birney
• [Bioperl-l] porting from BlastXXX to GenericXXX   Steve Chervitz
• [Bioperl-l] new cvs module bioperl-runnable   Catherine Letondal
• [Bioperl-l] new cvs module bioperl-runnable   Elia Stupka
• [Bioperl-l] new cvs module bioperl-runnable   Heikki Lehvaslaiho
• [Bioperl-l] new cvs module bioperl-runnable   Catherine Letondal
• [Bioperl-l] potential Bio::SeqIO/ addition ? Inline::C usage??   Aaron J Mackey
• [Bioperl-l] new cvs module bioperl-runnable   Heikki Lehvaslaiho
• [Bioperl-l] Coordinate mapping   Heikki Lehvaslaiho
• [Bioperl-l] Coordinate mapping   Robson Francisco de Souza
• [Bioperl-l] potential Bio::SeqIO/ addition ? Inline::C usage??   Ewan Birney
• [Bioperl-l] Coordinate mapping   Ewan Birney
• [Bioperl-l] Coordinate mapping   Heikki Lehvaslaiho
• [Bioperl-l] Coordinate mapping   Ewan Birney
• [Bioperl-l] Re: [Bioperl-guts-l] bioperl commit   Elia Stupka
• [Bioperl-l] XML BLAST parsing & accessions   T.D. Houfek
• [Bioperl-l] Coordinate mapping   David Block
• [Bioperl-l] 'virtual' seqs   Jason Stajich
• [Bioperl-l] 'virtual' seqs   David Block
• [Bioperl-l] XML BLAST parsing & accessions   Jason Stajich
• [Bioperl-l] 'virtual' seqs   Jason Stajich
• [Bioperl-l] XML BLAST parsing & accessions   T.D. Houfek
• [Bioperl-l] YAPC::Europe::2002   Jason Stajich
• [Bioperl-l] fasta program parsing   Emig, Robin
• [Bioperl-l] 'virtual' seqs   Elia Stupka
• [Bioperl-l] 'virtual' seqs   Elia Stupka
• [Bioperl-l] fasta program parsing   Jason Stajich
• [Bioperl-l] [Bioperl-guts-l] Notification: incoming/1215 (fwd)   Jason Stajich
• [Bioperl-l] [Bioperl-guts-l] Notification: incoming/1216 (fwd)   Jason Stajich
• [Bioperl-l] Bio::Tools::HMMER   Mick Watson
• [Bioperl-l] Re: [Bioperl-guts-l] Notification: incoming/1216 (fwd)   BHurwitz@twt.com
• [Bioperl-l] Re: [Bioperl-guts-l] Notification: incoming/1216 (fwd)   Jason Stajich
• [Bioperl-l] Coordinate mapping   Lincoln Stein
• [Bioperl-l] Coordinate mapping   Lincoln Stein
• [Bioperl-l] 'virtual' seqs   Lincoln Stein
• [Bioperl-l] Re: [Bioperl-guts-l] Notification: incoming/1216 (fwd)   BHurwitz@twt.com
• [Bioperl-l] moving Bio::Tools::Run, 1.1 release plans   Jason Stajich
• [Bioperl-l] Help:: running perlmod2www.pl   Viren Konde
• [Bioperl-l] Help:: running perlmod2www.pl   Viren Konde
• [Bioperl-l] Help:: running perlmod2www.pl   Viren Konde
• [Bioperl-l] Help:: running perlmod2www.pl   Viren Konde
• [Bioperl-l] Help:: running perlmod2www.pl   Viren Konde
• [Bioperl-l] Help:: running perlmod2www.pl   Viren Konde
• [Bioperl-l] Help:: running perlmod2www.pl   Viren Konde
• [Bioperl-l] Help::running perlmod2www.pl   Viren Konde
• [Bioperl-l] Help::running perlmod2www.pl   Viren Konde
• [Bioperl-l] Help::running perlmod2www.pl   Abhijit Konde
• [Bioperl-l] Help::running perlmod2www.pl   Abhijit Konde
• [Bioperl-l] Help::running perlmod2www.pl   Viren Konde
• [Bioperl-l] Error Message   Dibakar Ray
• [Bioperl-l] Error Message   Heikki Lehvaslaiho
• [Bioperl-l] timing out blast jobs in StandAloneBlast.   BHurwitz@twt.com
• [Bioperl-l] Help::running perlmod2www.pl   Jason Stajich
• [Bioperl-l] Pasteur bioperl course upgrade   Catherine Letondal
• [Bioperl-l] Writing blast report with HitTableWriter   Vilanova,David,LAUSANNE,NRC/BS
• [Bioperl-l] Writing blast report with HitTableWriter   Jason Stajich
• [Bioperl-l] moving Bio::Tools::Run, 1.1 release plans   Lincoln Stein
• [Bioperl-l] Can't find Carp/Heavy.pm using BPbl2seq module   JDiggans@genelogic.com
• [Bioperl-l] moving Bio::Tools::Run, 1.1 release plans   Elia Stupka
• [Bioperl-l] moving Bio::Tools::Run, 1.1 release plans   Jason Stajich
• [Bioperl-l] moving Bio::Tools::Run, 1.1 release plans   Elia Stupka
• [Bioperl-l] moving Bio::Tools::Run, 1.1 release plans   Jason Stajich
• [Bioperl-l] moving Bio::Tools::Run, 1.1 release plans   Elia Stupka
• [Bioperl-l] Can't find Carp/Heavy.pm using BPbl2seq module   Gisel, Andreas
• [Bioperl-l] v1.0.1 BLAST SearchIO woes   JDiggans@genelogic.com
• [Bioperl-l] v1.0.1 BLAST SearchIO woes   Jason Stajich
• [Bioperl-l] v1.0.1 BLAST SearchIO woes   JDiggans@genelogic.com
• [Bioperl-l] [Q] distance calculation between residues in PDB   Vlad P
• [Bioperl-l] [Q] distance calculation between residues in PDB   Vlad P
• [Bioperl-l] Performance improvements for gbrowse   Lincoln Stein
• [Bioperl-l] Business on Trust (Reply Needed)   Idowu Ajayi
• [Bioperl-l] Business on Trust (Reply Needed)   Idowu Ajayi
• [Bioperl-l] [Q] distance calculation between residues in PDB   Kris Boulez
• [Bioperl-l] v1.0.1 BLAST SearchIO woes   Jason Stajich
• [Bioperl-l] new cvs module bioperl-runnable   Hilmar Lapp
• [Bioperl-l] 'virtual' seqs   Hilmar Lapp
• [Bioperl-l] 'virtual' seqs   Jason Stajich
• [Bioperl-l] new cvs module bioperl-runnable   Jason Stajich
• [Bioperl-l] new cvs module bioperl-runnable   Elia Stupka
• [Bioperl-l] new cvs module bioperl-runnable   Jason Stajich
• [Bioperl-l] new cvs module bioperl-runnable   Elia Stupka
• [Bioperl-l] 'virtual' seqs   Ewan Birney
• [Bioperl-l] Refactoring Locations...   Heikki Lehvaslaiho
• [Bioperl-l] retrieving raw traces   Jonathan Epstein
• [Bioperl-l] Hello bioperl-l !   TUTU KABILA
• [Bioperl-l] Hello bioperl-l !   TUTU KABILA
• [Bioperl-l] Hello bioperl-l !   TUTU KABILA
• [Bioperl-l] Hello bioperl-l !   TUTU KABILA
• [Bioperl-l] bioperl-run   Jason Stajich
• [Bioperl-l] Refactoring Locations...   Lincoln Stein
• [Bioperl-l] 'virtual' seqs   Lincoln Stein
• [Bioperl-l] timing out a blast in StandAloneBlast.pm   BHurwitz@twt.com
• [Bioperl-l] Refactoring Locations...   Chris Mungall
• [Bioperl-l] 'virtual' seqs   Hilmar Lapp
• [Bioperl-l] 'virtual' seqs   Elia Stupka
• [Bioperl-l] Refactoring Locations...   Ewan Birney
• [Bioperl-l] 'virtual' seqs   Ewan Birney
• [Bioperl-l] Parsing ClustalW reports   Rhazes Spell

Last message date: Sat Jun 29 20:15:08 2002
Archived on: Sat Jun 29 14:09:03 2002

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