[Bioperl-l] Coordinate mapping

[Heikki Lehvaslaiho]

I'll do it - once I understand the code...

	-heikki


Ewan Birney wrote:
> On Thu, 20 Jun 2002, Heikki Lehvaslaiho wrote:
> 
> 
>>I am going to commit a first version of the  Bio::Coordinate::Mapper.pm 
>>module today. I'll start writing it so that it converts integer value form 
>>one coodinate system to an other and then later take into account 
>>(subclassing or overwriting) Bio::Location start/end pairwise locations.
>>The coordinate systems can have values like peptide, propeptide, cds, 
>>transcript, gene, clone, ...
> 
> 
> 
> Heikki - before you start - why not import the Bio::EnsEMBL::Mapper::*
> wholesale into Bioperl (though it wont do 1 ---> 3 mappings, ie DNA --->
> protein). 
> 
> Hmmmm.
> 
> 
> 
>>I will be committing quite often. This is the second time I am starting to 
>>write this module. I lost the first version when my laptop crashed :-(
>>
>>	-Heikki
>>
>>-- 
>>______ _/      _/_____________________________________________________
>>       _/      _/                      http://www.ebi.ac.uk/mutations/
>>      _/  _/  _/  Heikki Lehvaslaiho          heikki@ebi.ac.uk
>>     _/_/_/_/_/  EMBL Outstation, European Bioinformatics Institute
>>    _/  _/  _/  Wellcome Trust Genome Campus, Hinxton
>>   _/  _/  _/  Cambs. CB10 1SD, United Kingdom
>>      _/      Phone: +44 (0)1223 494 644   FAX: +44 (0)1223 494 468
>>___ _/_/_/_/_/________________________________________________________
>>
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>>
> 
> 
> -----------------------------------------------------------------
> Ewan Birney. Mobile: +44 (0)7970 151230, Work: +44 1223 494420
> <birney@ebi.ac.uk>. 
> -----------------------------------------------------------------
> 


-- 
______ _/      _/_____________________________________________________
       _/      _/                      http://www.ebi.ac.uk/mutations/
      _/  _/  _/  Heikki Lehvaslaiho          heikki@ebi.ac.uk
     _/_/_/_/_/  EMBL Outstation, European Bioinformatics Institute
    _/  _/  _/  Wellcome Trust Genome Campus, Hinxton
   _/  _/  _/  Cambs. CB10 1SD, United Kingdom
      _/      Phone: +44 (0)1223 494 644   FAX: +44 (0)1223 494 468
___ _/_/_/_/_/________________________________________________________