[Bioperl-l] Coordinate mapping

[Lincoln Stein]

Aha.  I see Ewan responded already.

Lincoln

On Thursday 20 June 2002 10:03 am, Heikki Lehvaslaiho wrote:
> I'll do it - once I understand the code...
>
> 	-heikki
>
> Ewan Birney wrote:
> > On Thu, 20 Jun 2002, Heikki Lehvaslaiho wrote:
> >>I am going to commit a first version of the  Bio::Coordinate::Mapper.pm
> >>module today. I'll start writing it so that it converts integer value
> >> form one coodinate system to an other and then later take into account
> >> (subclassing or overwriting) Bio::Location start/end pairwise locations.
> >> The coordinate systems can have values like peptide, propeptide, cds,
> >> transcript, gene, clone, ...
> >
> > Heikki - before you start - why not import the Bio::EnsEMBL::Mapper::*
> > wholesale into Bioperl (though it wont do 1 ---> 3 mappings, ie DNA --->
> > protein).
> >
> > Hmmmm.
> >
> >>I will be committing quite often. This is the second time I am starting
> >> to write this module. I lost the first version when my laptop crashed
> >> :-(
> >>
> >>	-Heikki
> >>
> >>--
> >>______ _/      _/_____________________________________________________
> >>       _/      _/                      http://www.ebi.ac.uk/mutations/
> >>      _/  _/  _/  Heikki Lehvaslaiho          heikki@ebi.ac.uk
> >>     _/_/_/_/_/  EMBL Outstation, European Bioinformatics Institute
> >>    _/  _/  _/  Wellcome Trust Genome Campus, Hinxton
> >>   _/  _/  _/  Cambs. CB10 1SD, United Kingdom
> >>      _/      Phone: +44 (0)1223 494 644   FAX: +44 (0)1223 494 468
> >>___ _/_/_/_/_/________________________________________________________
> >>
> >>_______________________________________________
> >>Bioperl-l mailing list
> >>Bioperl-l@bioperl.org
> >>http://bioperl.org/mailman/listinfo/bioperl-l
> >
> > -----------------------------------------------------------------
> > Ewan Birney. Mobile: +44 (0)7970 151230, Work: +44 1223 494420
> > <birney@ebi.ac.uk>.
> > -----------------------------------------------------------------

-- 
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Lincoln D. Stein                           Cold Spring Harbor Laboratory
lstein@cshl.org			                  Cold Spring Harbor, NY
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