[Bioperl-l] Help:: running perlmod2www.pl

Sun, 23 Jun 2002 23:04:00 -0700 (PDT)

Dear Members,

I have problem running the script perlmod2www.pl:
OS:WinME
ActivePerl 5.6.1
BioPerl1.0

When I run the script,  like this....
C:\Pdoc-1.0pack\scripts>perl perlmod2www.pl -source
c:\Perl\lib\bioperl1.0\bioperl\bio
-target \pdoc1.0\pdoc -wroot C:\pdoc1.0\pdoc >pdoc.txt

The output is given below >>..which gives only the
half way documentation...passing through
only 5-6 subdirectories of
c:\Perl\lib\bioperl1.0\bioperl\bio...
Even it does not create the index.html file of 3
frames.

But when run through the individual subdirectories of
c:\Perl\lib\bioperl1.0\bioperl\bio, it creates the 
documentation with index file limited only to that
subdirectory modules.

>>Here is the Output: Please read the error message at
the end of this output:

Getting tree from
c:\Perl\lib\bioperl1.0\bioperl\bio...
Generating indexes...
Creating levels index file
\pdoc1.0\pdoc\all_packages.html
Creating global Perl modules index file
\pdoc1.0\pdoc\all_modules.html
Creating Perl modules index file
\pdoc1.0\pdoc\\modules.html
Creating Perl modules index file
\pdoc1.0\pdoc\Variation\modules.html
Creating Perl modules index file
\pdoc1.0\pdoc\Variation\IO\modules.html
Creating Perl modules index file
\pdoc1.0\pdoc\TreeIO\modules.html
Creating Perl modules index file
\pdoc1.0\pdoc\Tree\modules.html
Creating Perl modules index file
\pdoc1.0\pdoc\Tools\modules.html
Creating Perl modules index file
\pdoc1.0\pdoc\Tools\StateMachine\modules.html
Creating Perl modules index file
\pdoc1.0\pdoc\Tools\Sim4\modules.html
Creating Perl modules index file
\pdoc1.0\pdoc\Tools\Prediction\modules.html
Creating Perl modules index file
\pdoc1.0\pdoc\Tools\HMMER\modules.html
Creating Perl modules index file
\pdoc1.0\pdoc\Tools\Blast\modules.html
Creating Perl modules index file
\pdoc1.0\pdoc\Tools\BPlite\modules.html
Creating Perl modules index file
\pdoc1.0\pdoc\Tools\Alignment\modules.html
Creating Perl modules index file
\pdoc1.0\pdoc\Tools\Run\modules.html
Creating Perl modules index file
\pdoc1.0\pdoc\Tools\Run\Alignment\modules.html
Creating Perl modules index file
\pdoc1.0\pdoc\Symbol\modules.html
Creating Perl modules index file
\pdoc1.0\pdoc\Structure\modules.html
Creating Perl modules index file
\pdoc1.0\pdoc\Structure\SecStr\modules.html
Creating Perl modules index file
\pdoc1.0\pdoc\Structure\SecStr\STRIDE\modules.html
Creating Perl modules index file
\pdoc1.0\pdoc\Structure\SecStr\DSSP\modules.html
Creating Perl modules index file
\pdoc1.0\pdoc\Structure\IO\modules.html
Creating Perl modules index file
\pdoc1.0\pdoc\SeqIO\modules.html
Creating Perl modules index file
\pdoc1.0\pdoc\SeqIO\game\modules.html
Creating Perl modules index file
\pdoc1.0\pdoc\SeqFeature\modules.html
Creating Perl modules index file
\pdoc1.0\pdoc\SeqFeature\Gene\modules.html
Creating Perl modules index file
\pdoc1.0\pdoc\Seq\modules.html
Creating Perl modules index file
\pdoc1.0\pdoc\SearchIO\modules.html
Creating Perl modules index file
\pdoc1.0\pdoc\SearchIO\Writer\modules.html
Creating Perl modules index file
\pdoc1.0\pdoc\Search\modules.html
Creating Perl modules index file
\pdoc1.0\pdoc\Search\Result\modules.html
Creating Perl modules index file
\pdoc1.0\pdoc\Search\Hit\modules.html
Creating Perl modules index file
\pdoc1.0\pdoc\Search\HSP\modules.html
Creating Perl modules index file
\pdoc1.0\pdoc\Root\modules.html
Creating Perl modules index file
\pdoc1.0\pdoc\MapIO\modules.html
Creating Perl modules index file
\pdoc1.0\pdoc\Map\modules.html
Creating Perl modules index file
\pdoc1.0\pdoc\Location\modules.html
Creating Perl modules index file
\pdoc1.0\pdoc\LiveSeq\modules.html
Creating Perl modules index file
\pdoc1.0\pdoc\LiveSeq\IO\modules.html
Creating Perl modules index file
\pdoc1.0\pdoc\Index\modules.html
Creating Perl modules index file
\pdoc1.0\pdoc\Graphics\modules.html
Creating Perl modules index file
\pdoc1.0\pdoc\Graphics\Glyph\modules.html
Creating Perl modules index file
\pdoc1.0\pdoc\Factory\modules.html
Creating Perl modules index file
\pdoc1.0\pdoc\Event\modules.html
Creating Perl modules index file
\pdoc1.0\pdoc\Biblio\modules.html
Creating Perl modules index file
\pdoc1.0\pdoc\Biblio\IO\modules.html
Creating Perl modules index file
\pdoc1.0\pdoc\Annotation\modules.html
Creating Perl modules index file
\pdoc1.0\pdoc\AlignIO\modules.html
Creating Perl modules index file
\pdoc1.0\pdoc\Align\modules.html
Creating Perl modules index file
\pdoc1.0\pdoc\DB\modules.html
Creating Perl modules index file
\pdoc1.0\pdoc\DB\GFF\modules.html
Creating Perl modules index file
\pdoc1.0\pdoc\DB\GFF\Aggregator\modules.html
Creating Perl modules index file
\pdoc1.0\pdoc\DB\GFF\Adaptor\modules.html
Creating Perl modules index file
\pdoc1.0\pdoc\DB\GFF\Adaptor\dbi\modules.html
Creating Perl modules index file
\pdoc1.0\pdoc\DB\GFF\Util\modules.html
Creating Perl modules index file
\pdoc1.0\pdoc\DB\Biblio\modules.html
Creating Perl modules index file
\pdoc1.0\pdoc\DB\Flat\modules.html
Creating Perl modules index file
\pdoc1.0\pdoc\DB\Flat\BDB\modules.html
Generating documentation from
c:\Perl\lib\bioperl1.0\bioperl\bio\
# File c:\Perl\lib\bioperl1.0\bioperl\bio\AlignIO.pm
-> Rendering Bio::AlignIO in
   \pdoc1.0\pdoc\AlignIO.html
# File
c:\Perl\lib\bioperl1.0\bioperl\bio\AnalysisParserI.pm
-> Rendering Bio::AnalysisParserI in
   \pdoc1.0\pdoc\AnalysisParserI.html
# File
c:\Perl\lib\bioperl1.0\bioperl\bio\AnalysisResultI.pm
-> Rendering Bio::AnalysisResultI in
   \pdoc1.0\pdoc\AnalysisResultI.html
# File
c:\Perl\lib\bioperl1.0\bioperl\bio\Annotation.pm
-> Rendering Bio::Annotation in
   \pdoc1.0\pdoc\Annotation.html
# File
c:\Perl\lib\bioperl1.0\bioperl\bio\AnnotationCollectionI.pm
-> Rendering Bio::AnnotationCollectionI in
   \pdoc1.0\pdoc\AnnotationCollectionI.html
# File
c:\Perl\lib\bioperl1.0\bioperl\bio\AnnotationI.pm
-> Rendering Bio::AnnotationI in
   \pdoc1.0\pdoc\AnnotationI.html
# File c:\Perl\lib\bioperl1.0\bioperl\bio\Biblio.pm
-> Rendering Bio::Biblio in
   \pdoc1.0\pdoc\Biblio.html
# File
c:\Perl\lib\bioperl1.0\bioperl\bio\DBLinkContainerI.pm
-> Rendering Bio::DBLinkContainerI in
   \pdoc1.0\pdoc\DBLinkContainerI.html
# File c:\Perl\lib\bioperl1.0\bioperl\bio\DasI.pm
-> Rendering Bio::DasI in
   \pdoc1.0\pdoc\DasI.html
# File
c:\Perl\lib\bioperl1.0\bioperl\bio\DasSegmentI.pm
Warning: failed to parse and/or convert file
c:\Perl\lib\bioperl1.0\bioperl\bio\DasSegmentI.pm!
Check if package name definition is correct ('package'
line)
File skipped.
# File c:\Perl\lib\bioperl1.0\bioperl\bio\Graphics.pm
-> Rendering Bi                                       

                perl\bio\Tools\ESTScan.pm
-> Rendering Bio::Tools::ESTScan in
   \pdoc1.0\pdoc\Tools\ESTScan.html

The Output terminates with these lines>>
Can't find unicode character property definition via
main->r or r.pl at unicode/
Is/r.pl line 0

Any help would be highly appreciated.
Thanks..

-Viren

__________________________________________________
Do You Yahoo!?
Yahoo! - Official partner of 2002 FIFA World Cup
http://fifaworldcup.yahoo.com