[Bioperl-l] Bio::Tools::Phylo::PAML::Codeml

[Aaron J Mackey]

Jason, I've committed my first-pass attempt at an API by example in the
SYNOPSIS section.  Let me know what everyone likes and dislikes.  I'm not
(yet) making use of the Bio::AnalysisParserI or AnalysisResultI - are
these stable interfaces to make use of (if so, then the
$result->next_feature() doesn't make much sense for PAML) ?  Is there some
other Bio::Factory::Bleah module that I need to be paying homage to?

-Aaron