2001-February Archives by Thread

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Starting: Thu Feb 1 02:03:05 2001
Ending: Wed Feb 28 23:35:03 2001
Messages: 267

• [Bioperl-l] Status 0.7   Todd Richmond
  • [Bioperl-l] Status 0.7   Ewan Birney
    • [Bioperl-l] Status 0.7   Todd Richmond
  • [Bioperl-l] Status 0.7   Jason Stajich
    • [Bioperl-l] Status 0.7   Todd Richmond
      • [Bioperl-l] Status 0.7   Aaron J Mackey
      • [Bioperl-l] Status 0.7   Todd Richmond
• [Bioperl-l] Bio::Range and Bio::Range   Heikki Lehvaslaiho
  • [Bioperl-l] Bio::Range and Bio::Range   Jason Stajich
  • [Bioperl-l] Bio::Range and Bio::Range   Hilmar Lapp
    • [Bioperl-l] Bio::Range and Bio::Range   Heikki Lehvaslaiho
• [Bioperl-l] SeqIO: input from memory not file   J. Schaefer
  • [Bioperl-l] SeqIO: input from memory not file   Hilmar Lapp
    • [Bioperl-l] SeqIO: input from memory not file   Ewan Birney
  • [Bioperl-l] SeqIO: input from memory not file   Jason Stajich
    • [Bioperl-l] SeqIO: input from memory not file   J. Schaefer
• [Bioperl-l] Bio::SeqAnalysisParserI, Bio::Factory::SeqAnalysisParserFactory   Hilmar Lapp
  • [Bioperl-l] Bio::SeqAnalysisParserI, Bio::Factory::SeqAnalysisPar serFactory   Jason Stajich
• [Bioperl-l] Bio::Tools::HMMER   Hilmar Lapp
  • [Bioperl-l] Bio::Tools::HMMER   Ewan Birney
  • [Bioperl-l] Bio::Tools::HMMER   Jason Stajich
    • [Bioperl-l] Bio::Tools::HMMER   Ewan Birney
• [Bioperl-l] Gene Interface discussion   Hilmar Lapp
  • [Bioperl-l] Gene Interface discussion   Ewan Birney
    • [Bioperl-l] Gene Interface discussion   Hilmar Lapp
      • [Bioperl-l] Gene Interface discussion   Hilmar Lapp
      • [Bioperl-l] Gene Interface discussion   Ewan Birney
• [Bioperl-l] Gene Interface discussion   Hilmar Lapp
  • [Bioperl-l] Gene Interface discussion   Ewan Birney
• [Bioperl-l] Computation.pm   Hilmar Lapp
• [Bioperl-l] swiss.pm in Bio::SeqIO   Corradi, John
  • [Bioperl-l] swiss.pm in Bio::SeqIO   Hilmar Lapp
• [Bioperl-l] Historical cruft in module documentation   Kris Boulez
  • [Bioperl-l] Historical cruft in module documentation   Jason Stajich
• [Bioperl-l] Bioperl biocorba server code checked in   Jason Stajich
• [Bioperl-l] (no subject)   Bratty, Amy [PRI]
• [Bioperl-l] Status 0.7   Hilmar Lapp
• [Bioperl-l] GeneStructure: Interfaces   Hilmar Lapp
• [Bioperl-l] Bio::SeqIO::swiss.pm - gene names   Corradi, John
  • [Bioperl-l] Bio::SeqIO::swiss.pm - gene names   Hilmar Lapp
• [Bioperl-l] compound fuzzy locations   Jason Stajich
• [Bioperl-l] SeqI interface   Jason Stajich
  • [Bioperl-l] SeqI interface   Ewan Birney
    • [Bioperl-l] SeqI interface   Jason Stajich
      • [Bioperl-l] SeqI interface   Ewan Birney
      • [Bioperl-l] SeqI interface   Hilmar Lapp
      • [Bioperl-l] SeqI interface   Ewan Birney
• [Bioperl-l] Bioperl biocorba binding   Jason Stajich
• [Bioperl-l] Montreal YAPC conference?   chris dagdigian
• [Bioperl-l] Knock on effects of defaulting to zero in Locations   Ewan Birney
• [Bioperl-l] GeneStructure   Hilmar Lapp
• [Bioperl-l] Downloading UID Lists   David Schibeci
  • [Bioperl-l] Downloading UID Lists   Francis Ouellette
• [Bioperl-l] A tutorial on writing CORBA clients in Perl and Java   Alan Robinson
• [Bioperl-l] Workbench3 to have das functionality?   David Block
  • [Bioperl-l] Workbench3 to have das functionality?   Lincoln Stein
    • [Bioperl-l] Re: Workbench3 to have das functionality?   David Block
• [Bioperl-l] Workbench3 internals   David Block
• [Bioperl-l] CVS difficulties & SSH changes (need feedback)   Chris Dagdigian
• [Bioperl-l] Bio::Location::Simple   David Block
  • [Bioperl-l] Bio::Location::Simple   Ewan Birney
• [Bioperl-l] integration with bioperl-gui   David Block
  • [Bioperl-l] integration with bioperl-gui   Hilmar Lapp
    • [Bioperl-l] integration with bioperl-gui   Jason Stajich
      • [Bioperl-l] integration with bioperl-gui   David Block
      • [Bioperl-l] integration with bioperl-gui   Mark Wilkinson
• [Bioperl-l] how does blast.pm or bplite handle blast result of "no hits found "?   Zhao, David [PRI]
• [Bioperl-l] Locations   Heikki Lehvaslaiho
  • [Bioperl-l] Locations   Mark Wilkinson
    • [Bioperl-l] Locations   Heikki Lehvaslaiho
• [Bioperl-l] Bio::LiveSeq   Kris Boulez
  • [Bioperl-l] Bio::LiveSeq   Ewan Birney
• [Bioperl-l] join the list   yuyu bai
• [Bioperl-l] GeneStructure: complete   Hilmar Lapp
• [Bioperl-l] finally back!   Jason Stajich
  • [Bioperl-l] finally back!   Hilmar Lapp
• [Bioperl-l] problem reading multiple sequence fasta files   Adam Witney
  • [Bioperl-l] problem reading multiple sequence fasta files   Hilmar Lapp
• [Bioperl-l] Blast.pm   Schreiber, Mark
  • [Bioperl-l] Blast.pm   Hilmar Lapp
• [Bioperl-l] Status 0.7: let's get on track again   Hilmar Lapp
  • [Bioperl-l] Status 0.7: let's get on track again   Ewan Birney
• [Bioperl-l] LiveSeq   Joseph Insana
• [Bioperl-l] GFF method in Bio::SeqFeatureI   Hilmar Lapp
  • [Bioperl-l] GFF method in Bio::SeqFeatureI   David Block
  • [Bioperl-l] GFF method in Bio::SeqFeatureI   Ewan Birney
    • [Bioperl-l] GFF method in Bio::SeqFeatureI   Hilmar Lapp
      • [Bioperl-l] GFF method in Bio::SeqFeatureI   Matthew Pocock
      • [Bioperl-l] GFF method in Bio::SeqFeatureI   Ewan Birney
      • [Bioperl-l] GFF method in Bio::SeqFeatureI   Matthew Pocock
      • [Bioperl-l] GFF method in Bio::SeqFeatureI   Mark Wilkinson
      • [Bioperl-l] GFF method in Bio::SeqFeatureI   Mark Wilkinson
      • [Bioperl-l] GFF method in Bio::SeqFeatureI   Matthew Pocock
      • [Bioperl-l] GFF method in Bio::SeqFeatureI   Jason Stajich
      • [Bioperl-l] GFF handling in SeqFeatureI   Hilmar Lapp
      • [Bioperl-l] GFF handling in SeqFeatureI   Mark Wilkinson
• [Bioperl-l] Gene Interfaces in Bioperl 0.7; Review of bioperl 0.7 from Ensembl   Ewan Birney
  • [Bioperl-l] Re: Gene Interfaces in Bioperl 0.7; Review of bioperl 0.7 from Ensembl   Peter Sterk
  • [Bioperl-l] Gene Interfaces in Bioperl 0.7; Review of bioperl 0.7 from Ensembl   Hilmar Lapp
  • [Bioperl-l] Re: Gene Interfaces in Bioperl 0.7; Review of bioperl 0.7 from Ensembl   Lukasz Huminiecki
    • [Bioperl-l] Promoter   Ewan Birney
      • [Bioperl-l] Re: Promoter   Peter Sterk
      • [Bioperl-l] Re: Promoter   Elia Stupka
      • [Bioperl-l] Re: Promoter   Samuel Aparicio
• [Bioperl-l] GeneStructure interfaces   Alan Robinson (EBI)
  • [Bioperl-l] GeneStructure interfaces   Hilmar Lapp
  • [Bioperl-l] GeneStructure interfaces   Hilmar Lapp
• [Bioperl-l] BioPerl (and Java, etc?) at OScon   Nathan Torkington
  • [Bioperl-l] BioPerl (and Java, etc?) at OScon   Chris Dagdigian
    • [Bioperl-l] BioPerl (and Java, etc?) at OScon   Nathan Torkington
• [Bioperl-l] GeneStructure & Promoter(s)   Hilmar Lapp
  • [Bioperl-l] GeneStructure & Promoter(s)   Ewan Birney
    • [Bioperl-l] GeneStructure & Promoter(s)   Hilmar Lapp
    • [Bioperl-l] GeneStructure & Promoter(s)   Samuel Aparicio
      • [Bioperl-l] GeneStructure & Promoter(s)   Elia Stupka
• [Bioperl-l] HMMER   Ewan Birney
• [Bioperl-l] LocationI and CoordinatePolicy   Hilmar Lapp
  • [Bioperl-l] LocationI and CoordinatePolicy   Heikki Lehvaslaiho
• [Bioperl-l] Call for code freeze   Hilmar Lapp
  • [Bioperl-l] Call for code freeze   Jason Stajich
  • [Bioperl-l] Call for code freeze   Jason Stajich
    • [Bioperl-l] BPlite as SeqAnalyisParserI   Hilmar Lapp
      • [Bioperl-l] BPlite as SeqAnalyisParserI   Ewan Birney
      • [Bioperl-l] BPlite as SeqAnalyisParserI   Jason Stajich
      • [Bioperl-l] BPlite as SeqAnalyisParserI   Ewan Birney
      • [Bioperl-l] BPlite as SeqAnalyisParserI   Hilmar Lapp
• [Bioperl-l] GeneStructure & Promoter(s)   Osborne, Brian
  • [Bioperl-l] GeneStructure & Promoter(s)   Samuel Aparicio
• [Bioperl-l] Coordinator ---> Core group   Ewan Birney
• [Bioperl-l] newbie question   Joel Sevinsky
  • [Bioperl-l] newbie question   Jason Stajich
• [Bioperl-l] Bio::Tools::BP* changes   Jason Stajich
• [Bioperl-l] bug #249   Jason Stajich
  • [Bioperl-l] bug #249   Hilmar Lapp
    • [Bioperl-l] bug #249 & FT parsing   Jason Stajich
      • [Bioperl-l] bug #249 & FT parsing   Hilmar Lapp
      • [Bioperl-l] bug #249 & FT parsing   Jason Stajich
  • [Bioperl-l] bug #249   Ewan Birney
    • [Bioperl-l] bug #249   Alan Robinson
• [Bioperl-l] Bio::PrimarySeqI   Hilmar Lapp
  • [Bioperl-l] Re: Bio::PrimarySeqI   Ewan Birney
    • [Bioperl-l] Re: Bio::PrimarySeqI   Hilmar Lapp
      • [Bioperl-l] Re: Bio::PrimarySeqI   Ewan Birney
      • [Bioperl-l] Re: Bio::PrimarySeqI   Hilmar Lapp
• [Bioperl-l] PPSEARCH, PRFSCAN, PRINTS   Hilmar Lapp
• [Bioperl-l] Bug fixes and assignments   Hilmar Lapp
  • [Bioperl-l] Bug fixes and assignments   Ewan Birney
• [Bioperl-l] Re: [Biocorba-l] Bioperl biocorba server code checked in   Jason Stajich
• [Bioperl-l] Linefeed mix-up (bug #903)   Hilmar Lapp
  • [Bioperl-l] Linefeed mix-up (bug #903)   Chad Price
    • [Bioperl-l] Linefeed mix-up (bug #903)   James VanEe
• [Bioperl-l] Linefeed mix-up (bug #903)   Brad Langohrst
  • [Bioperl-l] Linefeed mix-up (bug #903)   Hilmar Lapp
    • [Bioperl-l] Linefeed mix-up (bug #903)   Brad Langhorst
      • [Bioperl-l] Linefeed mix-up (bug #903)   Ewan Birney
      • [Bioperl-l] Linefeed mix-up (bug #903)   Jason Stajich
      • [Bioperl-l] Linefeed mix-up (bug #903)   Ewan Birney
      • [Bioperl-l] Linefeed mix-up (bug #903)   Hilmar Lapp
      • [Bioperl-l] Mac issues   Todd Richmond
• [Bioperl-l] anonymous CVS unavailable   chris dagdigian
• [Bioperl-l] GFF test hanging   Ewan Birney
  • [Bioperl-l] GFF test hanging   Ewan Birney
  • [Bioperl-l] GFF test hanging   Hilmar Lapp
• [Bioperl-l] bioperl.pod   Ewan Birney
• [Bioperl-l] does BLAST parsing working in (forthcoming) 0.7 on Windoze?   Jonathan Epstein
  • [Bioperl-l] does BLAST parsing working in (forthcoming) 0.7 on Windoze?   Hilmar Lapp
    • [Bioperl-l] does BLAST parsing working in (forthcoming) 0.7 on Windoze?   Shailesh L Mistry
  • [Bioperl-l] does BLAST parsing working in (forthcoming) 0.7 on Windoze?   Ewan Birney
• [Bioperl-l] tutorial material   Jonathan Epstein
  • [Bioperl-l] tutorial material   Heikki Lehvaslaiho
    • [Bioperl-l] tutorial material   Hilmar Lapp
• [Bioperl-l] clustering algorithms in BioPerl   Frank Gibbons
  • [Bioperl-l] clustering algorithms in BioPerl   Hilmar Lapp
  • [Bioperl-l] clustering algorithms in BioPerl   Ewan Birney
  • [Bioperl-l] clustering algorithms in BioPerl   Heikki Lehvaslaiho
• [Bioperl-l] FWD: Mail System Error - Returned Mail   Frank Gibbons
  • [Bioperl-l] FWD: Mail System Error - Returned Mail   Aaron J Mackey
• [Bioperl-l] does BLAST parsing working in (forthcoming) 0.7 on   Mike Reith
  • [Bioperl-l] does BLAST parsing working in (forthcoming) 0.7 on   Hilmar Lapp
• [Bioperl-l] Protein encoding by both DNA strands   Hilmar Lapp
  • [Bioperl-l] Re: Protein encoding by both DNA strands   Ewan Birney
    • [Bioperl-l] Re: Protein encoding by both DNA strands   Samuel Aparicio
• [Bioperl-l] clustering algorithms in BioPerl   Singh-Gasson Sangeet-ASG022
• [Bioperl-l] Bio::PrimarySeqI::GCG_checksum   Hilmar Lapp
  • [Bioperl-l] Bio::PrimarySeqI::GCG_checksum   Ewan Birney
    • [Bioperl-l] Bio::PrimarySeqI::GCG_checksum   Hilmar Lapp
      • [Bioperl-l] Bio::PrimarySeqI::GCG_checksum   Ewan Birney
• [Bioperl-l] Notice: anonymous CVS available again   chris dagdigian
• [Bioperl-l] GenBank SeqIO   Hilmar Lapp
• [Bioperl-l] GenBank/GenPept DB/SeqIO: more problems   Hilmar Lapp
• [Bioperl-l] Newbie Question   Schreiber, Mark
  • [Bioperl-l] Newbie Question   Hilmar Lapp
• [Bioperl-l] SeqIO problem   Schreiber, Mark
  • [Bioperl-l] SeqIO problem   Murad Nayal
  • [Bioperl-l] SeqIO problem   Hilmar Lapp
• [Bioperl-l] IO code, tempfile, File::Spec etc   Hilmar Lapp
• [Bioperl-l] make test problems   Peter Schattner
  • [Bioperl-l] make test problems   Jason Stajich
  • [Bioperl-l] make test problems on Redhat 7.0   Chris Dagdigian
    • [Bioperl-l] make test problems on Redhat 7.0   Peter Schattner
• [Bioperl-l] clustering algorithms in BioPerl   Kevin Clancy
• [Bioperl-l] Bundle::BioPerl and 07 release   Chris Dagdigian
  • [Bioperl-l] Bundle::BioPerl and 07 release   Hilmar Lapp
• [Bioperl-l] ALOM2 source code?   Tsvika
• [Bioperl-l] hardcoded filenames in test scripts   Hilmar Lapp
• [Bioperl-l] SeqFeature::Generic 'frame' method   Jason Stajich
  • [Bioperl-l] SeqFeature::Generic 'frame' method   Hilmar Lapp
    • [Bioperl-l] SeqFeature::Generic 'frame' method   Jason Stajich
      • [Bioperl-l] SeqFeature::Generic 'frame' method   Hilmar Lapp
      • [Bioperl-l] SeqFeature::Generic 'frame' method   Jason Stajich
      • [Bioperl-l] SeqFeature::Generic 'frame' method   Hilmar Lapp
      • [Bioperl-l] SeqFeature::Generic 'frame' method   Jason Stajich
      • [Bioperl-l] SeqFeature::Generic 'frame' method   Paul Gordon
      • [Bioperl-l] SeqFeature::Generic 'frame' method   Jeffrey Chang
      • [Bioperl-l] SeqFeature::Generic 'frame' method   Ewan Birney
• [Bioperl-l] VariantI   Ewan Birney
  • [Bioperl-l] VariantI   Jason Stajich
• [Bioperl-l] 5.0004 compatibility   Ewan Birney
• [Bioperl-l] Aha. 5.0004 does not like exit() in BEGIN blocks.   Ewan Birney
• [Bioperl-l] my todo list   Jason Stajich
  • [Bioperl-l] my todo list   Jason Stajich
    • [Bioperl-l] my todo list   Hilmar Lapp
      • [Bioperl-l] my todo list   Jason Stajich
      • [Bioperl-l] my todo list   Ewan Birney
      • [Bioperl-l] my todo list   Hilmar Lapp
      • [Bioperl-l] my todo list   Ewan Birney
• [Bioperl-l] Re: [Bioperl-guts-l] Notification: incoming/908   Hilmar Lapp
  • [Bioperl-l] Re: [Bioperl-guts-l] Notification: incoming/908   Nicolas Joly
• [Bioperl-l] Can't call method "seek" without a package or object reference   Hilmar Lapp
  • [Bioperl-l] Re: Can't call method "seek" without a package or object reference   Todd Richmond
    • [Bioperl-l] Re: Can't call method "seek" without a package or object reference   Hilmar Lapp
      • [Bioperl-l] Re: Can't call method "seek" without a package or object reference   Jason Stajich
      • [Bioperl-l] Re: Can't call method "seek" without a package or object reference   Ewan Birney
• [Bioperl-l] hardcoded paths in test scripts (II)   Hilmar Lapp
  • [Bioperl-l] hardcoded paths in test scripts (II)   Todd Richmond
    • [Bioperl-l] hardcoded paths in test scripts (II)   Hilmar Lapp
      • [Bioperl-l] hardcoded paths in test scripts (II)   Todd Richmond
• [Bioperl-l] my todo list   Jonathan Epstein
• [Bioperl-l] Modifying Blast.pm problems   Mark, Terry
  • [Bioperl-l] Modifying Blast.pm problems   Hilmar Lapp
  • [Bioperl-l] Modifying Blast.pm problems   Jason Stajich
• [Bioperl-l] bug #246   Jason Stajich
• [Bioperl-l] Re: Can't call method "seek" without a package or object reference   Todd Richmond
• [Bioperl-l] GDB.t   Ewan Birney
  • [Bioperl-l] GDB.t   Todd Richmond
• [Bioperl-l] all tests but GDB.t pass on 5.0004   Ewan Birney
• [Bioperl-l] bug #900: Bio::SeqIO::swiss.pm - gene names   Hilmar Lapp
  • [Bioperl-l] bug #900: Bio::SeqIO::swiss.pm - gene names   Jason Stajich
• [Bioperl-l] Testing on MSWin   Shailesh L Mistry
  • [Bioperl-l] Testing on MSWin   Hilmar Lapp
• [Bioperl-l] tempfiles   Jason Stajich
• [Bioperl-l] Blast?   Wiepert, Mathieu
• [Bioperl-l] tarball   Jason Stajich
• [Bioperl-l] Sorry - 5.004 really complaining again...   Ewan Birney
  • [Bioperl-l] Re: Sorry - 5.004 really complaining again...   Jason Stajich
    • [Bioperl-l] Re: Sorry - 5.004 really complaining again...   Ewan Birney
• [Bioperl-l] tarball   Jonathan Epstein
• [Bioperl-l] Quick roll-call of our users (need your help!)   Chris Dagdigian
• [Bioperl-l] $@#!$! backwards compatibility   Jason Stajich
  • [Bioperl-l] $@#!$! backwards compatibility   Aaron J Mackey
• [Bioperl-l] A wild thought...   David Block
  • [Bioperl-l] A wild thought...   Hilmar Lapp
• [Bioperl-l] Damian's in London right now   David Block
• [Bioperl-l] tests passing   Ewan Birney
  • [Bioperl-l] tests passing   Hilmar Lapp
• [Bioperl-l] minor 07 release to-do list   Chris Dagdigian
  • [Bioperl-l] Q for Ewan or ??   Mark Wilkinson

Last message date: Wed Feb 28 23:35:03 2001
Archived on: Mon Mar 5 18:01:39 2001

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