[Bioperl-l] integration with bioperl-gui

[David Block]

DUH!
My bad!
One cvs update -d to the rescue!
I was wondering why there was no such directory.

And I was feeling oh-so superior to Mark when he did this a few weeks
ago...


On Mon, 12 Feb 2001, Jason Stajich wrote:

> Location::Simple is the default mechanism for handling Locations, so we
> fall back on it if a user does not specify a specific Location model.
> SeqFeature::Generic will not really work with the new Location model
> without being able to create a Bio::Location::Simple.  
> 
> Please make sure you really have all the bioperl-live dirs checked out
> % cvs update -dP 
> 
> Heikki sent a nice hint for those doing UNIX based development. 
> If you create the file ~/.cvsrc with the following lines
> update -dP
> cvs -q -z9
> 
> You should get create/remove missing/uneeded dirs when doing a cvs update.
> Seems to work for me.
> 
> And be double sure that bioperl-live comes before any other bioperl
> versions in your @INC (either add to @INC in your script or set PERL5LIB
> to point to your bioperl-live directory).
> 
> -jason
> 
> On Mon, 12 Feb 2001, Hilmar Lapp wrote:
> 
> > David Block wrote:
> > > 
> > > Workbench seems to be fine, once I removed the reference to
> > > Location::Simple from SeqFeature::Generic.
> > > 
> > > This should also not be a problem if we can actually get a working
> > > Location::Simple.
> > > 
> > 
> > David, I'm not sure it has to be in SeqFeature::Generic, but
> > regardless of that, a *working* Location::Simple is supposed to be
> > present. Check Bio/Location/* - which files do you see there?
> > 
> > 	Hilmar
> > -- 
> > -------------------------------------------------------------
> > Hilmar Lapp                            email: lapp@gnf.org
> > GNF, San Diego, Ca. 92121              phone: +1-858-812-1757
> > -------------------------------------------------------------
> > 
> 
> Jason Stajich
> jason@chg.mc.duke.edu
> Center for Human Genetics
> Duke University Medical Center 
> http://www.chg.duke.edu/ 
> 
> 
> 

-- 
David Block
dblock@gene.pbi.nrc.ca
http://bioinfo.pbi.nrc.ca/dblock/wiki
Plant Biotechnology Institute
National Research Council of Canada
Saskatoon, Saskatchewan