[Bioperl-l] Bio::Tools::HMMER

[Ewan Birney]

On Sun, 4 Feb 2001, Hilmar Lapp wrote:

> I've added some deprecation warnings where the documentation says
> that the methods *are* deprecated. This is now triggering lots of
> warnings in the HMMER test. Anyone willing to fix it?

I'll look at this and the interface compliance. No promises...

> 
> <Warning: the following is purely technical and may mean nothing
> to those who don't know the module's code> In addition, I've
> changed the way the 2 features are initialized in Domain.pm. The
> potential problem here is that if you set freshly initialized
> SeqFeature objects after initializing $self you may lose all
> -start etc initialization parameters. BTW is creating the two
> feature objects still necessary, as FeaturePair creates them
> itself if requested and not yet set.</warning>
> 
> 	Hilmar
> -- 
> -----------------------------------------------------------------
> Hilmar Lapp                                email: hlapp@gmx.net
> GNF, San Diego, Ca. 92122                  phone: +1 858 812 1757
> -----------------------------------------------------------------
> _______________________________________________
> Bioperl-l mailing list
> Bioperl-l@bioperl.org
> http://bioperl.org/mailman/listinfo/bioperl-l
> 

-----------------------------------------------------------------
Ewan Birney. Mobile: +44 (0)7970 151230, Work: +44 1223 494420
<birney@ebi.ac.uk>. 
-----------------------------------------------------------------