[Bioperl-l] make test problems

[Jason Stajich]

Peter, hey, I just committed a fix for it now.  Can you try it out and
see.   Oops, I should have announced I was going to try and work on it, I
hope I didn't step on your toes.

-Jason
On Mon, 26 Feb 2001, Peter Schattner wrote:

> Hi
> 
> I've been attempting to resolve the BPlite bug(s) (eg Bug # 885).
> However, now I've got a problem which has me completely stalled.  I just
> upgraded to Redhat 7.0 (which I probably shouldn't have done but seemed
> like a good idea at the time. I was already running perl 5.6)  Now when
> I do "make test" for bioperl-0.6.2, I get the following errors:
> 
> [peter@pschattner bioperl-0.6.2]$ make test
> PERL_DL_NONLAZY=1 /usr/local/bin/perl -Iblib/arch -Iblib/lib
> -I/usr/local/lib/perl5/5.6.0/i686-linux -I/usr/local/lib/perl5/5.6.0 -e
> 'use Test::Harness qw(&runtests $verbose); $verbose=0; runtests @ARGV;'
> t/*.t
> Can't load '/usr/local/lib/perl5/5.6.0/i686-linux/auto/IO/IO.so' for
> module IO: symbol fsetpos64, version GLIBC_2.1 not defined in file
> libc.so.6 with link time reference at
> /usr/local/lib/perl5/5.6.0/i686-linux/XSLoader.pm line 73.
>  at /usr/local/lib/perl5/5.6.0/i686-linux/IO.pm line 9
> Compilation failed in require at
> /usr/local/lib/perl5/5.6.0/i686-linux/IO/Handle.pm line 241.
> BEGIN failed--compilation aborted at
> /usr/local/lib/perl5/5.6.0/i686-linux/IO/Handle.pm line 241.
> Compilation failed in require at
> /usr/local/lib/perl5/5.6.0/i686-linux/IO/Seekable.pm line 51.
> BEGIN failed--compilation aborted at
> /usr/local/lib/perl5/5.6.0/i686-linux/IO/Seekable.pm line 51.
> Compilation failed in require at
> /usr/local/lib/perl5/5.6.0/i686-linux/IO/File.pm line 112.
> BEGIN failed--compilation aborted at
> /usr/local/lib/perl5/5.6.0/i686-linux/IO/File.pm line 112.
> Compilation failed in require at
> /usr/local/lib/perl5/5.6.0/FileHandle.pm line 9.
> Compilation failed in require at
> /usr/local/lib/perl5/5.6.0/Test/Harness.pm line 7.
> BEGIN failed--compilation aborted at
> /usr/local/lib/perl5/5.6.0/Test/Harness.pm line 7.
> Compilation failed in require at -e line 1.
> BEGIN failed--compilation aborted at -e line 1.
> make: *** [test_dynamic] Error 255
> 
> The same thing happens when I try to make & test bioperl-live.
> 
> So my questions are:
> 
> Does anyone know how to get rid of this error?
> 
> Is anyone running bioperl under Redhat 7.0 and are there any special
> tricks needed to make that happen.
> 
> Thanks folks
> 
> Peter
> 
> 
> 
> 
> 
> 
> 
> 
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> 

Jason Stajich
jason@chg.mc.duke.edu
Center for Human Genetics
Duke University Medical Center 
http://www.chg.duke.edu/