[Bioperl-l] Re: Sorry - 5.004 really complaining again...

[Ewan Birney]

On Wed, 28 Feb 2001, Jason Stajich wrote:

> I'm going to guess that you do indeed have File::Temp installed but in
> fact it is an old version that does not support the method, tempdir....
> We can fix this by by testing for presence of tempdir...  Wow I had no
> idea that was even a possibility.

Good guess! That looks bang on. Works ok on a pure no
"File::Temp" installation. Got "noise" like:

going to remove dir /tmp/dir_birney-631-2



Failing GDB.t still...



obi-wan[birney]47: perl -I . t/GDB.t 
1..11
ok 1
ok 2
not ok 3
# Test 3 got: 'unknown' (t/GDB.t at line 50)
#   Expected: 'GDB:188296' (value was unknown)
not ok 4
# Test 4 got: 'notfound' (t/GDB.t at line 51)
#   Expected: 'GCCCAGGAGGTTGAGG' (value was notfound)
not ok 5
# Test 5 got: 'notfound' (t/GDB.t at line 52)
#   Expected: 'AAGGCAGGCTTGAATTACAG' (value was notfound)
not ok 6
# Test 6 got: <UNDEF> (t/GDB.t at line 53)
#   Expected: '226' (value was )
ok 7
not ok 8
# Test 8 got: 'unknown' (t/GDB.t at line 59)
#   Expected: 'GDB:198271' (value was unknown)
not ok 9
# Test 9 got: 'notfound' (t/GDB.t at line 60)
#   Expected: 'GGGTGACAGAACAAGACCT' (value was notfound)
not ok 10
# Test 10 got: 'notfound' (t/GDB.t at line 61)
#    Expected: 'ACCCATTAGCCTTGAACTGA' (value was notfound)
not ok 11
# Test 11 got: <UNDEF> (t/GDB.t at line 62)
#    Expected: '155' (value was )



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Ewan Birney. Mobile: +44 (0)7970 151230, Work: +44 1223 494420
<birney@ebi.ac.uk>. 
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