[Bioperl-l] Bio::Tools::BP* changes

[Jason Stajich]

I have made BPlite Bio::SeqAnalysisParserI compliant.  So you can iterate
through all the HSPs by looping over $bplite->next_feature calls.

I also added support for both -FH and -FILE named parameters in new for
BPlite, BPbl2seq, and BPpsilite.  This also forces BPbl2seq to require
named parameters rather than just allowing user to pass in the filehandle
as the first argument.  This is required behavior to properly support
RootI inheritance (which relies on named parameters like -verbose, etc).

Jason Stajich
jason@chg.mc.duke.edu
Center for Human Genetics
Duke University Medical Center 
http://www.chg.duke.edu/