[Bioperl-l] Bug fixes and assignments

[Ewan Birney]

On Tue, 20 Feb 2001, Hilmar Lapp wrote:

> I checked the bugs and think we can/should fix the following bugs.
> I added a suggested assignment where I know who developed the
> module or was recently hacking it. If you want to volunteer for
> fixing any of the bugs, assigned or unassigned, you're more than
> welcome. If you see a bug assigned to you but are unable to fix it
> in the next days for whatever reason, please unsubscribe from that
> assignment explicitely (email to me).

Ok. I'm signed up for the pSW bugs (859, 869, 215). The persistent IRIX
compatibility one I'd like to dodge as last time I did it I screwed up a
different platform. 

The HMMER one is a feature request not a bug. I may/may not get around to
that. 


> 
> #160: myself, or Jason (needs an addition to RichSeq and a fix of
> the parser)
> 
> #168: any volunteers?
> 
> #215: this really is about the extension package; I created a new
> category bioperl-ext and moved it there (Ewan, does the problem
> still exist?)
> 
> #246: being addressed by Jason
> 
> #843: low priority, if anyone then it's me
> 
> #859: pSW.pm: Ewan. You submitted this yourself?
> 
> #860: Bio::Index::Abstract.pm: guess/use right DBM module. Any
> takers?
> 
> #869: pSW.pm: Ewan.
> 
> #876: genbank->pir->genbank doesn't work. Any takers? I wouldn't
> rate it highest priority.
> 
> #877: being checked with the submittor
> 
> #881: HMMER: Ewan. Looks like it is more a feature-request. Could
> you verify?
> 
> #885: BPlite.pm: Peter S. (or Jason?)
> 
> #888: should be fixed, checking with Mark
> 
> #889: bioperl.pod: who's willing to update that?
> 
> #890-898: Todd and others, could you please help me and check
> which ones are still valid. It is already clear that we need to
> fix the hard-coded path separator in test scripts when a file
> t/myinput is specified (anyone willing to take this on?).
> 
> #900: suggests that Annotation::gene_name() in fact should be an
> array. Alternatively, we could add gene_synonyms() to Annotation.
> Comments?
> 
> We have a total number of 21 bugs left in incoming (apart from
> numerous others in the blast category). Before I started to
> compile this list, we had 11 more ...
> 
> 	Hilmar
> -- 
> -----------------------------------------------------------------
> Hilmar Lapp                              email: hlapp@gmx.net
> GNF, San Diego, Ca. 92122                phone: +1 858 812 1757
> -----------------------------------------------------------------
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Ewan Birney. Mobile: +44 (0)7970 151230, Work: +44 1223 494420
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