[Bioperl-l] Bio::Tools::HMMER

[Hilmar Lapp]

I've added some deprecation warnings where the documentation says
that the methods *are* deprecated. This is now triggering lots of
warnings in the HMMER test. Anyone willing to fix it?

<Warning: the following is purely technical and may mean nothing
to those who don't know the module's code> In addition, I've
changed the way the 2 features are initialized in Domain.pm. The
potential problem here is that if you set freshly initialized
SeqFeature objects after initializing $self you may lose all
-start etc initialization parameters. BTW is creating the two
feature objects still necessary, as FeaturePair creates them
itself if requested and not yet set.</warning>

	Hilmar
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Hilmar Lapp                                email: hlapp@gmx.net
GNF, San Diego, Ca. 92122                  phone: +1 858 812 1757
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