October 2003 Archives by thread

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Starting: Wed Oct 1 12:30:47 EST 2003
Ending: Fri Oct 31 20:29:43 EST 2003
Messages: 272

• [Bioperl-l] Bioperl Developer snapshot 1.3.01   Heikki Lehvaslaiho
  • [Bioperl-l] 1.3.02 failed tests   Rob Edwards
    • [Bioperl-l] 1.3.02 failed tests   Hilmar Lapp
      • [Bioperl-l] 1.3.02 failed tests   Jason Stajich
      • [Bioperl-l] 1.3.02 failed tests   Hilmar Lapp
      • [Bioperl-l] 1.3.02 failed tests   Rob Edwards
      • [Bioperl-l] 1.3.02 failed tests   Hilmar Lapp
      • [Bioperl-l] 1.3.02 failed tests   Allen Day
      • [Bioperl-l] 1.3.02 failed tests   Hilmar Lapp
• [Bioperl-l] Installation Problems   Brian Madsen
  • [Bioperl-l] Installation Problems   Heikki Lehvaslaiho
• [Bioperl-l] Bio::Tools::GFF GFF3 parsing   Chris Mungall
• [Bioperl-l] Can't locate loadable object for module GD   Eileen goh
• [Bioperl-l] RE: problem connecting to remote blast   Jason Stajich
  • [Bioperl-l] RE: problem connecting to remote blast   Stefan Kirov
• [Bioperl-l] Remote Blast   Sandro da Silva Camargo
  • [Bioperl-l] Remote Blast   Ewan Birney
  • [Bioperl-l] Remote Blast   Ewan Birney
• [Bioperl-l] help (fwd)   Jason Stajich
  • [Bioperl-l] help (fwd)   Stefan Kirov
• [Bioperl-l] Installation Problems   Brian Madsen
• [Bioperl-l] Bioperl PPM for 1.2.3   Brian Osborne
• [Bioperl-l] something wrong with my code?   Ambrose Ng
  • [Bioperl-l] something wrong with my code?   Jason Stajich
• [Bioperl-l] Remote Blast   Sandro da Silva Camargo
• [Bioperl-l] Bio::Graphics output   Lincoln Stein
  • [Bioperl-l] Bio::Graphics output   Niels Larsen
• [Bioperl-l] OS X bioperl, staden/read, install problems   Jim Nolan
  • [Bioperl-l] OS X bioperl, staden/read, install problems   Jason Stajich
  • [Bioperl-l] OS X bioperl, staden/read, install problems   Brian Osborne
    • [Bioperl-l] OS X bioperl, staden/read, install problems   Jim Nolan
      • [Bioperl-l] OS X bioperl, staden/read, install problems   Jason Stajich
      • [Bioperl-l] OS X bioperl, staden/read, install problems   Jim Nolan
      • [Bioperl-l] OS X bioperl, staden/read, install problems   Jim Nolan
      • [Bioperl-l] OS X bioperl, staden/read, install problems   Jason Stajich
      • [Bioperl-l] OS X bioperl, staden/read, install problems   Aaron J Mackey
      • [Bioperl-l] OS X bioperl, staden/read, install problems   Jim Nolan
• [Bioperl-l] Bio::Root::IO possible bug?   Vamsi
  • [Bioperl-l] Bio::Root::IO possible bug?   Jason Stajich
    • [Bioperl-l] Bio::Root::IO possible bug?   Vamsi
• [Bioperl-l] (no subject)   010381P GOH PHUAY CHENG
• [Bioperl-l] OS X bioperl, staden/read, install problems (fwd)   Jason Stajich
• [Bioperl-l] Available; Government and private financing in Canada   C B R C
• [Bioperl-l] Bio::Graphics segments problem   Lincoln Stein
• [Bioperl-l] GD problem   Lincoln Stein
• [Bioperl-l] Stealing CA $9 billions = Recall Election   ENRON = Swarzenegger
• [Bioperl-l] Stealing CA $9 billions = Recall Election   ENRON = Swarzenegger
• [Bioperl-l] Re: [apollo] Guidance for a newbie   Lincoln Stein
  • [Bioperl-l] Re: [apollo] Guidance for a newbie   Lincoln Stein
• [Bioperl-l] problems running Bio::Graphics   Eileen goh
  • [Bioperl-l] problems running Bio::Graphics   Lincoln Stein
• [Bioperl-l] Bio::Graphics sort_order   Richard Adams
  • [Bioperl-l] Bio::Graphics sort_order   Lincoln Stein
• [Bioperl-l] Bio::Biblio   Charles Plessy
  • [Bioperl-l] Bio::Biblio   Brian Osborne
• [Bioperl-l] Re: Bio::Biblio   Martin Senger
• [Bioperl-l] Bio::DB::Query::GenBank - how to specify Keyword   ypeng at sfu.ca
• [Bioperl-l] GD installation problems for Solaris 9   Stephen DiFazio
  • [Bioperl-l] GD installation problems for Solaris 9   Lincoln Stein
• [Bioperl-l] How can i get ...   Fabiola Sánchez
• [Bioperl-l] How can i get lines without tag, next to organism   Fabiola Sánchez
  • [Bioperl-l] How can i get lines without tag, next to organism   Jason Stajich
  • [Bioperl-l] How can i get lines without tag, next to organism   Heikki Lehvaslaiho
• [Bioperl-l] bp 1.2.3 ppm install fails   Scott Cain
  • [Bioperl-l] bp 1.2.3 ppm install fails   Brian Osborne
    • [Bioperl-l] bp 1.2.3 ppm install fails   Scott Cain
      • [Bioperl-l] bp 1.2.3 ppm install fails   Chris Fields
      • [Bioperl-l] bp 1.2.3 ppm install fails   Lincoln Stein
    • [Bioperl-l] bp 1.2.3 ppm install fails   Lincoln Stein
• [Bioperl-l] protein localiz. & signal peptide   Vesko Baev
• [Bioperl-l] RE: [Pubmednew] Problem with esearch.fcgi   Holland, Richard
  • [Bioperl-l] RE: [Pubmednew] Problem with esearch.fcgi   Heikki Lehvaslaiho
    • [Bioperl-l] RE: [Pubmednew] Problem with esearch.fcgi   Andrew Walsh
      • [Bioperl-l] RE: [Pubmednew] Problem with esearch.fcgi   Jason Stajich
• [Bioperl-l] seqIO   Desmond Lim
  • [Bioperl-l] seqIO   Hilmar Lapp
• [Bioperl-l] seqIO   Desmond Lim
• [Bioperl-l] seqIO   Desmond Lim
  • [Bioperl-l] seqIO   Josh Lauricha
  • [Bioperl-l] seqIO   Lincoln Stein
• [Bioperl-l] Homologene parsing   Richard Adams
• [Bioperl-l] How can i get ...   Marc Logghe
• [Bioperl-l] PPM Install for libxml-perl   Nigam Shah
• [Bioperl-l] bioperl-db: Updating existing Databases with load_seqdatabase.pl and load_ontology   Raphael A. Bauer
  • [Bioperl-l] bioperl-db: Updating existing Databases with load_seqdatabase.pl and load_ontology   Hilmar Lapp
• [Bioperl-l] Fwd: having problems with abi.pm   Aaron J. Mackey
• [Bioperl-l] seqIO   Desmond Lim
  • [Bioperl-l] seqIO   Jason Stajich
  • [Bioperl-l] seqIO   Shawn Hoon
  • Asking for help on the bioperl mailing list. WAS: [Bioperl-l] seqIO   Lincoln Stein
    • Asking for help on the bioperl mailing list. WAS: [Bioperl-l] seqIO   Hilmar Lapp
• [Bioperl-l] HTMLResultWriter questions   Daniel Lang
  • [Bioperl-l] HTMLResultWriter questions   Oliver Wafzig
• [Bioperl-l] Re: [BioSQL-l] Error using load_seqdatabase.pl   Hilmar Lapp
• [Bioperl-l] Re: [BioSQL-l] Error using load_seqdatabase.pl   Hilmar Lapp
  • [Bioperl-l] Re: [BioSQL-l] Error using load_seqdatabase.pl   Robert Roth
    • [Bioperl-l] Re: [BioSQL-l] Error using load_seqdatabase.pl   Brian Osborne
      • [Bioperl-l] Re: [BioSQL-l] Error using load_seqdatabase.pl   Robert Roth
      • [Bioperl-l] Re: [BioSQL-l] Error using load_seqdatabase.pl   Brian Osborne
• [Bioperl-l] cvs access problems?   Roels, Steven
• [Bioperl-l] cvs access problems?   Roels, Steven
• [Bioperl-l] load_gff.pl error   Vamsi
  • [Bioperl-l] load_gff.pl error   Lincoln Stein
    • [BioPerl] Re: [Bioperl-l] load_gff.pl error   Mark Wilkinson
      • [BioPerl] Re: [Bioperl-l] load_gff.pl error   Lincoln Stein
      • [BioPerl] Re: [Bioperl-l] load_gff.pl error   Mark Wilkinson
      • [BioPerl] Re: [Bioperl-l] load_gff.pl error   Sheldon McKay
      • [BioPerl] Re: [Bioperl-l] load_gff.pl error   Lincoln Stein
      • [unclassified] Re: [BioPerl] Re: [Bioperl-l] load_gff.pl error   Mark Wilkinson
• [Bioperl-l] search for only C-terminal degenerate motifs   Lucas Carey
  • [Bioperl-l] search for only C-terminal degenerate motifs   Brian Osborne
    • [Bioperl-l] search for only C-terminal degenerate motifs   Aaron J. Mackey
      • [Bioperl-l] search for only C-terminal degenerate motifs   Lucas Carey
      • [Bioperl-l] search for only C-terminal degenerate motifs   Aaron J Mackey
• [Bioperl-l] Problem retrieving peptides using GenPept   Palle Villesen
  • [Bioperl-l] Problem retrieving peptides using GenPept   Brian Osborne
  • [Bioperl-l] Problem retrieving peptides using GenPept   Lincoln Stein
• [Bioperl-l] Re: Bio::Biblio   Martin Senger
  • A script to automagically generate DocBook formatted references. (was : Re: [Bioperl-l] Re: Bio::Biblio)   Charles Plessy
• [Bioperl-l] Suggestions for MATLAB-Bioperl Interface   Brian Madsen
  • [Bioperl-l] Suggestions for MATLAB-Bioperl Interface   Catherine Letondal
• [Bioperl-l] Method dnaseq in EncodedSeq not working properly?   Steffen Grossmann
  • [Bioperl-l] Method dnaseq in EncodedSeq not working properly?   Aaron J. Mackey
• [Bioperl-l] Bio::Graphics HOWTO :: about of the color of graph   Koichi Minamijima
• [Bioperl-l] www.bioperl.org   Sharon Brown
• [Bioperl-l] bioperl-pipeline   William Kenworthy
  • [Bioperl-l] bioperl-pipeline   Shawn Hoon
    • [Bioperl-l] bioperl-pipeline   D. Joe Anderson
• [Bioperl-l] [Bioperl] LocusLink   Zayed Albertyn
  • [Bioperl-l] [Bioperl] LocusLink   Hilmar Lapp
• [Bioperl-l] Bio::Index::PDB   Shawn Hoon
  • [Bioperl-l] Bio::Index::PDB   Brian Osborne
    • [Bioperl-l] Bio::Index::PDB   Shawn Hoon
• [Bioperl-l] Abandoned GBentries   babenko
• [Bioperl-l] [OBDA] proxy settings.   Jérôme Etévé
• [Bioperl-l] Codon Table   michael watson (IAH-C)
  • [Bioperl-l] Codon Table   Jason Stajich
  • [Bioperl-l] Codon Table   Heikki Lehvaslaiho
    • [Bioperl-l] Codon Table   Heikki Lehvaslaiho
• [Bioperl-l] carlos   Carlos Fernandez-Patron
• [Bioperl-l] Bioperl parser for Gene Expression Omnibus   Zayed Albertyn
• [Bioperl-l] BioPerl programmer opening at Electric Genetics   Tania Broveak Hide
• [Bioperl-l] Does bioperl is the answer?   Christiane Nerz
• [Bioperl-l] (no subject)   velasco
  • [Bioperl-l] (no subject)   Brian Osborne
• [Bioperl-l] Bio::DB::Registry   Daniel Lang
  • [Bioperl-l] Bio::DB::Registry   Brian Osborne
    • [Bioperl-l] Bio::DB::Registry   Daniel Lang
      • [Bioperl-l] Bio::DB::Registry   Brian Osborne
• [Bioperl-l] installation problems   Richard Rouse
  • [Bioperl-l] installation problems   Jason Stajich
    • [Bioperl-l] installation problems   Hilmar Lapp
• [Bioperl-l] RemoteBlast: can't get a TaxBlast report   Cannon, William R
  • [Bioperl-l] need a devloper for RemoteBlast (was RemoteBlast: can't get a TaxBlast report)   Jason Stajich
• [Bioperl-l] How do you create a genbank file?   Wes Barris
• [Bioperl-l] How do you create a genbank file?   Marc Logghe
  • [Bioperl-l] How do you create a genbank file?   Jason Stajich
• [Bioperl-l] Bioperl Developer snapshot 1.3.02   Heikki Lehvaslaiho
• [Bioperl-l] bioperl mirror at iubio.bio.indiana.edu now daily updated   Heikki Lehvaslaiho
• [Bioperl-l] How do you create a genbank file?   Marc Logghe
  • [Bioperl-l] How do you create a genbank file?   Jason Stajich
    • [Bioperl-l] (no subject)   Henry Hyun-il Paik
      • [Bioperl-l] (no subject)   Ewan Birney
      • [Bioperl-l] a space in Feature key   Henry Hyun-il Paik
      • [Bioperl-l] a space in Feature key   Heikki Lehvaslaiho
• [Bioperl-l] How do you create a genbank file?   Marc Logghe
• [Bioperl-l] Phylip format for phylogeny   Mike Muratet
  • [Bioperl-l] Phylip format for phylogeny   Jason Stajich
  • [Bioperl-l] Phylip format for phylogeny   Richard Copley
• [Bioperl-l] a space in Feature key in the Feature Table.   hyupaik at indiana.edu
• [Bioperl-l] 'Suspicious' headers   Michael Muratet
  • [Bioperl-l] 'Suspicious' headers   chris dagdigian
• [Bioperl-l] some tests fail on Mac OS X and Bioperl 1.302   Koen van der Drift
• [Bioperl-l] New modules   Rob Edwards
  • [Bioperl-l] New modules   Brian Osborne
    • [Bioperl-l] New modules   Rob Edwards
      • [Bioperl-l] New modules   Brian Osborne
• [Bioperl-l] Pise: control on submissions   Catherine Letondal
• [Bioperl-l] Bio::DB::Registry   Brian Osborne
  • [Bioperl-l] Bio::DB::Registry   Daniel Lang
    • [Bioperl-l] Bio::DB::Registry   Brian Osborne
• [Bioperl-l] Sequence from PDB   Mike Muratet
  • [Bioperl-l] Sequence from PDB   Brian Osborne
• [Bioperl-l] Bio::SeqIO::kegg   Allen Day
  • [Bioperl-l] Bio::SeqIO::kegg   Ewan Birney
  • [Bioperl-l] Bio::SeqIO::kegg   Hilmar Lapp
• [Bioperl-l] Bio::SeqFeature::Generic   Charles Hauser
  • Bio::Tools::GFF [Re: [Bioperl-l] Bio::SeqFeature::Generic]   Heikki Lehvaslaiho
    • Bio::Tools::GFF [Re: [Bioperl-l] Bio::SeqFeature::Generic]   Jason Stajich
• [Bioperl-l] Orion BioSolutions Kits, $25 to you with Purchase   billym at orionbiosolutions.com
• [Bioperl-l] Retrieve mail   Ryan Doherty
  • [offtopic] Re: [Bioperl-l] Retrieve mail   Andreas Kahari
  • [Bioperl-l] modified Fasta-Headers?   Andreas Boehm
• [Bioperl-l] modified Fasta-Headers?   Andreas Boehm
• [Bioperl-l] modified Fasta-Headers?   Martin Schenker
  • [Bioperl-l] modified Fasta-Headers?   Andreas Boehm
• [Bioperl-l] [Bioperl-guts-l] [Bug 1544] New: Trouble dissecting problem Bio::SeqIO (fwd)   Jason Stajich
• [Bioperl-l] GFF3: preliminary or implemented?   Charles Hauser
  • [Bioperl-l] GFF3: preliminary or implemented?   Lincoln Stein
  • [Bioperl-l] GFF3: preliminary or implemented?   Chris Mungall
    • [Gmod-gbrowse] Re: [Bioperl-l] GFF3: preliminary or implemented?   Lincoln Stein
• [Bioperl-l] What's that number?   michael
  • [Bioperl-l] What's that number?   Peter Wilkinson
    • [Bioperl-l] What's that number?   Andrew Walsh
    • [BioPerl] Re: [Bioperl-l] What's that number?   Mark Wilkinson
• [Bioperl-l] Question re: Phred Base Quality Data & Bio::SeqIO::scf   Cooper, Marc Emmerson
• [Bioperl-l] ADV: . Resume for JOB or Service   ADV; . Energy Systems & Electrical Design
• [Bioperl-l] ADV: . Resume for JOB or Service   ADV; . Energy Systems & Electrical Design
• [Bioperl-l] Netwok problem?   Konopnicki, David
• [Bioperl-l] Bio::Graphics::Pictogram   Jack Chen
  • [Bioperl-l] Bio::Graphics::Pictogram   Shawn Hoon
• [Bioperl-l] Help me to deal with "MSG: blastall call crashed: -1 blastall ..."   hcuong
• [Bioperl-l] Mechanical & Design E n g i n e e r   Richard's Resume
• [Bioperl-l] Mechanical & Design E n g i n e e r   Richard's Resume
• [Bioperl-l] tests   Heikki Lehvaslaiho
  • [Bioperl-l] tests   Lincoln Stein
    • [Bioperl-l] tests   Heikki Lehvaslaiho
      • [Bioperl-l] tests   Lincoln Stein
• [Bioperl-l] Help me to deal with "MSG: blastall call crashed: -1blastall ..."   Joseph Bedell
• [Bioperl-l] Codon Table   michael watson (IAH-C)
  • [Bioperl-l] Codon Table   Ewan Birney
• [Bioperl-l] Resume from CAD Specialist / Operator / Drafter   Civil & Structural Designer
• [Bioperl-l] Resume from CAD Specialist / Operator / Drafter   Civil & Structural Designer
• [Bioperl-l] Codon Table   Marc Logghe
• [Bioperl-l] Codon Table   michael watson (IAH-C)
• [Bioperl-l] RE: :DB::Registry   Brian Osborne
• [Bioperl-l] Re: Question on the scf file format   Heikki Lehvaslaiho
• [Bioperl-l] running T_coffee with bioperl on a windows system   LE GALL Tony
  • [Bioperl-l] running T_coffee with bioperl on a windows system   Brian Osborne
• [Bioperl-l] RangeI.pm warnings   Luc.Gauthier at aventis.com
• [Bioperl-l] Bio::SimpleAlign methods   Richard Adams
• [Bioperl-l] bug #1546 and BPlite/BPpsilite   Jason Stajich
• [Bioperl-l] bioperl-db schema   Natalie Hawkins
  • [Bioperl-l] bioperl-db schema   Jason Stajich
• [Bioperl-l] how to align the description to glyph   Magic Fang
• [Bioperl-l] bioperl-db schema   Marc Logghe
• [Bioperl-l] Re: [Bioperl-guts-l] bioperl commit   Aaron J Mackey
• [Bioperl-l] rpsblast from bioperl   Alexandre Irrthum
  • [Bioperl-l] rpsblast from bioperl   Jason Stajich
• [Bioperl-l] Restriction Enzyme cuts on Circular plasmids   Gray, John
  • [Bioperl-l] Restriction Enzyme cuts on Circular plasmids   Rob Edwards
  • [Bioperl-l] Restriction Enzyme cuts on Circular plasmids   Jason Stajich
    • [Bioperl-l] Restriction Enzyme cuts on Circular plasmids   Rob Edwards
      • [Bioperl-l] Restriction Enzyme cuts on Circular plasmids   Brian Osborne
• [Bioperl-l] LargeSeq performance   Stefan Kirov
  • [Bioperl-l] LargeSeq performance   Jason Stajich
• [Bioperl-l] perl script to retrieve accession numbers   M V
  • [Bioperl-l] perl script to retrieve accession numbers   Andrew Walsh
• [Bioperl-l] RemoteBlast   Richard Adams
• [Bioperl-l] Restriction Enzyme cuts on Circular plasmids   Gray, John
  • [Bioperl-l] Restriction Enzyme cuts on Circular plasmids   Rob Edwards
• [Bioperl-l] Restriction Enzyme cuts on Circular plasmids   Gray, John
  • [Bioperl-l] Restriction Enzyme cuts on Circular plasmids   Rob Edwards
• [Bioperl-l] How do you create a Bio::Align::AlignI object?   Wes Barris
  • [Bioperl-l] How do you create a Bio::Align::AlignI object?   Josh Lauricha
• [Bioperl-l] SearchIO::Writer::HTMLResultWriter question   Daniel Lang
  • [Bioperl-l] SearchIO::Writer::HTMLResultWriter question   Jason Stajich
• [Bioperl-l] gcg.pm   Derek Gatherer
  • [Bioperl-l] gcg.pm   Jason Stajich
  • [Bioperl-l] gcg.pm   Hilmar Lapp
• [Bioperl-l] Re: default RemoteBlast user agent   Richard Adams
• [Bioperl-l] allowgaps parameter in Bio::SearchIO   Daniel Lang
  • [Bioperl-l] allowgaps parameter in Bio::SearchIO   Jason Stajich
• [Bioperl-l] Restriction Enzyme cuts on Circular plasmids   Gray, John
  • [Bioperl-l] Restriction Enzyme cuts on Circular plasmids   Rob Edwards
• [Bioperl-l] gcg.pm, another one   Derek Gatherer
  • [Bioperl-l] gcg.pm, another one   Hilmar Lapp
• [Bioperl-l] Glimmer   michael watson (IAH-C)
  • [Bioperl-l] Glimmer   Jason Stajich
• [Bioperl-l] Bio::SeqIO::tigr   Josh Lauricha
• [Bioperl-l] Re: RemoteBlast   paul.boutros at utoronto.ca
• [Bioperl-l] OMIM tests failing   Allen Day

Last message date: Fri Oct 31 20:29:43 EST 2003
Archived on: Fri Oct 31 20:26:33 EST 2003

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