[Bioperl-l] OMIM tests failing

[Allen Day]

any idea what's going on here?  i see some recent commits (yesterday, 
first in 7 months) by juguang.  it worked two days ago...

-allen

[5:27pm]allenday at sumo:/raid5a/allenday/cvsroot/bioperl-live> make 
test_OMIMentry
PERL_DL_NONLAZY=1 /usr/bin/perl -Iblib/arch -Iblib/lib 
-I/usr/lib/perl5/5.8.0/i386-linux-thread-multi -I/usr/lib/perl5/5.8.0 -e 
'use Test::Harness qw(&runtests $verbose); $verbose=0; runtests @ARGV;' 
t/OMIMentry.t
t/OMIMentry....ok 5/145                                                      
------------- EXCEPTION  -------------
MSG: a hash referenced needed
STACK Bio::Phenotype::OMIM::OMIMentry::clinical_symptoms 
blib/lib/Bio/Phenotype/OMIM/OMIMentry.pm:537
STACK toplevel t/OMIMentry.t:60

--------------------------------------
t/OMIMentry....dubious                                                       
        Test returned status 255 (wstat 65280, 0xff00)
DIED. FAILED tests 17-145
        Failed 129/145 tests, 11.03% okay
Failed Test   Stat Wstat Total Fail  Failed  List of Failed
-------------------------------------------------------------------------------
t/OMIMentry.t  255 65280   145  129  88.97%  17-145
Failed 1/1 test scripts, 0.00% okay. 129/145 subtests failed, 11.03% okay.
make: *** [test_OMIMentry] Error 2
[5:27pm]allenday at sumo:/raid5a/allenday/cvsroot/bioperl-live> make 
test_OMIMentryAllelicVariant
PERL_DL_NONLAZY=1 /usr/bin/perl -Iblib/arch -Iblib/lib 
-I/usr/lib/perl5/5.8.0/i386-linux-thread-multi -I/usr/lib/perl5/5.8.0 -e 
'use Test::Harness qw(&runtests $verbose); $verbose=0; runtests @ARGV;' 
t/OMIMentryAllelicVariant.t
t/OMIMentryAllelicVariant....ok                                              
All tests successful.
Files=1, Tests=26,  0 wallclock secs ( 0.14 cusr +  0.01 csys =  0.15 CPU)
[5:28pm]allenday at sumo:/raid5a/allenday/cvsroot/bioperl-live> make 
test_OMIMparser
PERL_DL_NONLAZY=1 /usr/bin/perl -Iblib/arch -Iblib/lib 
-I/usr/lib/perl5/5.8.0/i386-linux-thread-multi -I/usr/lib/perl5/5.8.0 -e 
'use Test::Harness qw(&runtests $verbose); $verbose=0; runtests @ARGV;' 
t/OMIMparser.t
t/OMIMparser....ok 1/173                                                     
------------- EXCEPTION  -------------
MSG: a part/organism must be assigned
STACK Bio::Phenotype::OMIM::OMIMentry::add_clinical_symptoms 
blib/lib/Bio/Phenotype/OMIM/OMIMentry.pm:567
STACK Bio::Phenotype::OMIM::OMIMparser::_finer_parse_symptoms 
blib/lib/Bio/Phenotype/OMIM/OMIMparser.pm:550
STACK Bio::Phenotype::OMIM::OMIMparser::_createOMIMentry 
blib/lib/Bio/Phenotype/OMIM/OMIMparser.pm:531
STACK Bio::Phenotype::OMIM::OMIMparser::next_phenotype 
blib/lib/Bio/Phenotype/OMIM/OMIMparser.pm:272
STACK toplevel t/OMIMparser.t:31

--------------------------------------
t/OMIMparser....dubious                                                      
        Test returned status 25 (wstat 6400, 0x1900)
DIED. FAILED tests 2-173
        Failed 172/173 tests, 0.58% okay
Failed Test    Stat Wstat Total Fail  Failed  List of Failed
-------------------------------------------------------------------------------
t/OMIMparser.t   25  6400   173  172  99.42%  2-173
Failed 1/1 test scripts, 0.00% okay. 172/173 subtests failed, 0.58% okay.
make: *** [test_OMIMparser] Error 2
[5:28pm]allenday at sumo:/raid5a/allenday/cvsroot/bioperl-live>