[Bioperl-l] Bio::DB::Registry

[Brian Osborne]

Daniel,

No problem, you're not bugging me. I have both BinarySearch and BDB working
with Registry and DB/Flat on my machine now. I'll take a look at your
get_databases() problem. Then I have to add some BDB/DB_File tests to
Registry.t. I'll tell you when this is all done, probably after the weekend.

What you should do is submit this get_databases() error into the tracking
system at bugzilla.bioperl.org with details, that would help.

Brian O.

-----Original Message-----
From: bioperl-l-bounces at portal.open-bio.org
[mailto:bioperl-l-bounces at portal.open-bio.org]On Behalf Of Daniel Lang
Sent: Wednesday, October 22, 2003 3:28 AM
To: Brian Osborne
Cc: bioperl-l at bioperl.org
Subject: Re: [Bioperl-l] Bio::DB::Registry

Hi Brian,
I hope I´m not getting on your nerves...
Now, there occurs a new problem when using flat indices:(
When I call services on the Registry object, it returns the list of the
available services, but when I want to "get_databases" on one of them I
get a Bio::DB::Failover Object...
I´ve registered a nt (FASTA) and an aa (SWISSPROT) flat file...
Of course, I´m still interested in using the bdb indices:)

Thanks again,
Daniel

--
Daniel Lang
University of Freiburg, Plant Biotechnology
Sonnenstr. 5, D-79104 Freiburg
phone: +49 761 203 6988
homepage:  http://www.plant-biotech.net/
e-mail: daniel.lang at biologie.uni-freiburg.de

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