[Bioperl-l] perl script to retrieve accession numbers

[Andrew Walsh]

You should read the Bioperl tutorial section on this:

http://www.bioperl.org/Core/Latest/bptutorial.html

http://www.bioperl.org/Core/Latest/bptutorial.html#iii.1.1_accessing_remote_databases_(bio::db::genbank,_etc)

Also read the PODs for Bio::DB::GenBank (i.e. use perldoc).

If you are retrieving lots of sequences, try using Batch Entrez on the 
NCBI website to get local copies of the sequences, then use 
Bio::Index::GenBank and Bio::SeqIO.  Check out those POD and you should 
go through the tutorial.

Andrew


M V wrote:
> Hi there,
>  
> Is there a perl script that retrieves the genbank accession numbers if I have a list of gene names? Thanks in advance.
>  
> Murmanmadi
> 
> 
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Andrew Walsh, M.Sc.
Bioinformatics Software Engineer
IT Unit
Cenix BioScience GmbH
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