[Bioperl-l] Problem retrieving peptides using GenPept

[Lincoln Stein]

Hi,

This looks like a problem in the parser when it hits an entry that is not 
prepared for.  My prediction would be that you will always get the exception 
at the same accession number, but it sounds like you get sometimes more and 
sometimes less?  Please see whether you can isolate the issue to a particular 
entry.  This will help debug the problem.

Lincoln

On Friday 10 October 2003 05:09 am, Palle Villesen wrote:
> Hi,
>
> I have the following code (below), but I get the following error and I'm
> stuck. I have tried various queries and I always get <300 seqs back
> before the exception occurs. I'm not sure if it a speed problem, i.e.
> retrieving the datastream quickjly enough, but I have tried the
> -retrievaltype=>'tempfile' as well - which didn't help.
>
> I couldn't find anything in the docs, hence this mail. Sorry to disturb.
>
> Greetings,
> P.

-- 
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Lincoln D. Stein                           Cold Spring Harbor Laboratory
lstein at cshl.org			                  Cold Spring Harbor, NY
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