[Bioperl-l] Codon Table

[Jason Stajich]

If the table is not there then you obviously have to hack CodonTable - you
need to add values to the @NAMES, @TABLES, @STARTS

You specify which table you want to use as
$table->id($n)
where $n is 1->23 - so you would want to add them to the bottom I suppose
but we

Is this table avaialble at
     http://www.ncbi.nlm.nih.gov/htbin-post/Taxonomy/wprintgc?mode=c

perhaps we need to update the module for new tables?


If this is a LOCAL only think you can add values to the available tables
by directly updating the value of these variables in your script

push @Bio::Tools::CodonTable::NAMES, 'NewName';
... etc (update the other values)
-jason
On Tue, 14 Oct 2003, michael watson (IAH-C) wrote:

> Hi
>
> I want to use a different codon table than any that are present in
> CodonTable.pm.  Does Bioperl have a way to implement this?  Or will I
> have to hack CodonTable.pm?
>
> Thanks
> Mick
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--
Jason Stajich
Duke University
jason at cgt.mc.duke.edu