[Bioperl-l] rpsblast from bioperl

[Jason Stajich]

Yes we support parsing it (use Bio::SearchIO format 'blast').

No we don't have a StandAloneBlast way of doing it, but you're welcome to
add that one method and we'll add it back into the toolkit.

-jason
On Wed, 29 Oct 2003, Alexandre Irrthum wrote:

> Hi everybody,
>
> I have to call the NCBI rpsblast program from within a Perl script. I
> wonder if there is a "bioperl" way to do that, similar to what the
> StandAloneBlast object can do for blastall or blastpgp. I also wonder if
> the Blast or BPlite parser objects support parsing of rpsblast reports.
>
> Thanks a lot for your help,
>
> alex
>
>
> P.S. please cc your answer to my email address if possible
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--
Jason Stajich
Duke University
jason at cgt.mc.duke.edu