[Bioperl-l] Sequence from PDB

[Brian Osborne]

Mike,

>From bptutorial:

  $structio = Bio::Structure::IO->new( -file => "1XYZ.pdb");
  $struc = $structio->next_structure; # returns an Entry object
  $pseq = $struc->seqres;             # returns a PrimarySeq object, thus
  $pseq->subseq(1,20);                # returns a sequence string

Brian O.

-----Original Message-----
From: bioperl-l-bounces at portal.open-bio.org
[mailto:bioperl-l-bounces at portal.open-bio.org]On Behalf Of Mike Muratet
Sent: Monday, October 20, 2003 1:34 PM
To: bioperl-l at bioperl.org
Subject: [Bioperl-l] Sequence from PDB

Greetings

Is there a method associated with the Bio::Structure family that will
extract the sequence (primary structure) from PDB files? I don't see one in
the documentation.

Thanks

Mike

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