2001-December Archives by Thread

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Starting: Sat Dec 1 06:59:52 2001
Ending: Mon Dec 31 20:42:54 2001
Messages: 167

• [Bioperl-l] New modules for STRIDE and DSSP output   Ed Green
  • [Bioperl-l] New modules for STRIDE and DSSP output   Kris Boulez
    • [Bioperl-l] New modules for STRIDE and DSSP output   Ewan Birney
      • [Bioperl-l] New modules for STRIDE and DSSP output   Kris Boulez
      • [Bioperl-l] New modules for STRIDE and DSSP output   Kris Boulez
• [Bioperl-l] Help on retrieving NT contigs with Bio::DB::GenBank.   Wiepert, Mathieu
• [Bioperl-l] Re: more on Genscan.pm   Hilmar Lapp
• [Bioperl-l] help installing pSW on OS X   Steven Cannon
  • [Bioperl-l] help installing pSW on OS X   Hilmar Lapp
    • [Bioperl-l] help installing pSW on OS X   Steven Cannon
• [Bioperl-l] help installing pSW on OS X   Hilmar Lapp
• [Bioperl-l] genbank searches   Josiah
• [Bioperl-l] [Fwd: [Volunteer] Offer help with structural bioinformatics]   chris dagdigian
• [Bioperl-l] storing and retrieving partial sequences   Jonathan Epstein
  • [Bioperl-l] storing and retrieving partial sequences   Jason Eric Stajich
    • [Bioperl-l] storing and retrieving partial sequences   Heikki Lehvaslaiho
      • [Bioperl-l] storing and retrieving partial sequences   Robson Francisco de Souza
      • [Bioperl-l] storing and retrieving partial sequences   Elia Stupka
      • [Bioperl-l] storing and retrieving partial sequences   Chris Mungall
      • [Bioperl-l] storing and retrieving partial sequences   Aaron J Mackey
      • [Bioperl-l] storing and retrieving partial sequences   Lincoln Stein
      • [Bioperl-l] storing and retrieving partial sequences   Aaron J Mackey
      • [Bioperl-l] storing and retrieving partial sequences   Lincoln Stein
• [Bioperl-l] Phylip wrappers   Jason Raymond
  • [Bioperl-l] Phylip wrappers   Catherine Letondal
• [Bioperl-l] help installing pSW on OS X   Steven Cannon
• [Bioperl-l] bug parsing Expect(2) in BPLite   David Martin
• [Bioperl-l] bugfix for BPLite Expect. (0.7.0)   David Martin
  • [Bioperl-l] bugfix for BPLite Expect. (0.7.0)   Heikki Lehvaslaiho
• [Bioperl-l] Exception parsing blast output   Vsevolod Ilyushchenko
  • [Bioperl-l] Exception parsing blast output   Jason Eric Stajich
• [Bioperl-l] Bio::SearchIO additions   Jason Eric Stajich
  • [Bioperl-l] Bio::SearchIO additions   Aaron J Mackey
• [Bioperl-l] out or toString method   Chad Matsalla
  • [Bioperl-l] out or toString method   Ewan Birney
    • [Bioperl-l] out or toString method   Chad Matsalla
      • [Bioperl-l] out or toString method   Kris Boulez
    • [Bioperl-l] out or toString method   Lincoln Stein
      • [Bioperl-l] out or toString method   Ewan Birney
• [Bioperl-l] hammer Results.pm trouble   Michal Kurowski
• [Bioperl-l] DB::GenBank/DB::GenPept and SearchIO::fasta   Jason Eric Stajich
• [Bioperl-l] (no subject)   manlin luo
• [Bioperl-l] Pushing towards 1.0   Ewan Birney
  • [Bioperl-l] Pushing towards 1.0   Jason Eric Stajich
    • [Bioperl-l] Pushing towards 1.0   Ewan Birney
      • [Bioperl-l] Pushing towards 1.0   Catherine Letondal
      • [Bioperl-l] Pushing towards 1.0   Heikki Lehvaslaiho
      • bioperl online course [Re: [Bioperl-l] Pushing towards 1.0 ]   Catherine Letondal
      • bioperl online course [Re: [Bioperl-l] Pushing towards 1.0 ]   Heikki Lehvaslaiho
      • [Bioperl-l] Pushing towards 1.0   Peter Schattner
  • [Bioperl-l] Pushing towards 1.0   Heikki Lehvaslaiho
  • [Bioperl-l] Pushing towards 1.0   Hilmar Lapp
    • [Bioperl-l] Pushing towards 1.0   Ewan Birney
      • [Bioperl-l] Pushing towards 1.0   Hilmar Lapp
• [Bioperl-l] Backward compatibility mode for Bio::Root::RootI   Ewan Birney
  • [Bioperl-l] Backward compatibility mode for Bio::Root::RootI   Lincoln Stein
    • [Bioperl-l] Backward compatibility mode for Bio::Root::RootI   Jason Stajich
      • [Bioperl-l] Backward compatibility mode for Bio::Root::RootI   Lincoln Stein
      • [Bioperl-l] Backward compatibility mode for Bio::Root::RootI   Ewan Birney
  • [Bioperl-l] Backward compatibility mode for Bio::Root::RootI   gert thijs
    • [Bioperl-l] Backward compatibility mode for Bio::Root::RootI   Lincoln Stein
• [Bioperl-l] (no subject)   WANG, SHIPING [AG/1000]
• [Bioperl-l] No text blast output; strip_html output non-parseable.   Vsevolod Ilyushchenko
  • [Bioperl-l] No text blast output; strip_html output non-parseable.   Ewan Birney
    • [Bioperl-l] No text blast output; strip_html output non-parseable.   Vsevolod Ilyushchenko
      • [Bioperl-l] No text blast output; strip_html output non-parseable.   Ewan Birney
• [Bioperl-l] other parts of feature complete   Jason Stajich
  • [Bioperl-l] other parts of feature complete   Ewan Birney
• [Bioperl-l] Parsing contig information from HTGs   simon andrews (BI)
• [Bioperl-l] Problem with Bio::DB::GeneBank   IIZUKA Soichi
• [Bioperl-l] SeqIO::genbank crash special case   jdiggans@genelogic.com
  • [Bioperl-l] SeqIO::genbank crash special case   Ewan Birney
  • [Bioperl-l] SeqIO::genbank crash special case   Ewan Birney
• [Bioperl-l] One to three letter code for amino acids   Kris Boulez
  • [Bioperl-l] One to three letter code for amino acids   Ewan Birney
    • [Bioperl-l] One to three letter code for amino acids   Kris Boulez
  • [Bioperl-l] One to three letter code for amino acids   Heikki Lehvaslaiho
    • [Bioperl-l] One to three letter code for amino acids   Kris Boulez
      • [Bioperl-l] One to three letter code for amino acids   Jason Stajich
      • [Bioperl-l] One to three letter code for amino acids   Heikki Lehvaslaiho
• [Bioperl-l] installing bioperl on Windows 2000 (help)   Chris Dagdigian
  • [Bioperl-l] installing bioperl on Windows 2000 (help)   Jonathan Epstein
    • [Bioperl-l] installing bioperl on Windows 2000 (help)   Bill Zhuang
      • [Bioperl-l] installing bioperl on Windows 2000 (help)   Jonathan Epstein
• [Bioperl-l] interesting blastxml issue   Jason Stajich
  • [Bioperl-l] interesting blastxml issue   Ewan Birney
• [Bioperl-l] escaping prime characters in POD?   Heikki Lehvaslaiho
  • [Bioperl-l] escaping prime characters in POD?   Jason Stajich
    • [Bioperl-l] escaping prime characters in POD?   Heikki Lehvaslaiho
• [Bioperl-l] Sequence Version from Bio::Seq   simon andrews (BI)
  • [Bioperl-l] Sequence Version from Bio::Seq   Jason Stajich
• [Bioperl-l] trouble with Boulder::Genbank module   Josiah Altschuler
• [Bioperl-l] trouble with Boulder::Genbank module   Osborne, Brian
  • [Bioperl-l] trouble with Boulder::Genbank module   Lincoln Stein
• [Bioperl-l] Re::installing bioperl on Windows 2000 (help)   Viren Konde
• [Bioperl-l] POD nitpicking   Heikki Lehvaslaiho
• [Bioperl-l] SeqIO::embl/SeqIO::genbank/SeqIO::swiss   James Smith
• [Bioperl-l] Re::installing bioperl on Windows 2000 (help)   Viren Konde
• [Bioperl-l] Bio::Tools::SeqPattern   Mark, Terry
• [Bioperl-l] Blast with GI's   Ross Gibbs
  • [Bioperl-l] Blast with GI's   James Gilbert
• [Bioperl-l] Installing Bioperl on Windows 98   Elizabeth Bowen
  • [Bioperl-l] Installing Bioperl on Windows 98   James Gilbert
  • [Bioperl-l] Installing Bioperl on Windows 98   Jurgen Pletinckx
    • [Bioperl-l] Installing Bioperl on Windows 98   Heikki Lehvaslaiho
• RefSeq retrieval Re: [Bioperl-l] Help on retrieving NT contigs with Bio::DB::GenBank.   Heikki Lehvaslaiho
• [Bioperl-l] Does pSW support DNA sequence?   Jason Stajich
  • [Bioperl-l] Does pSW support DNA sequence?   Ewan Birney
• [Bioperl-l] AlignIO::emboss   Jason Stajich
  • [Bioperl-l] counting sequences   nabula easter
  • [Bioperl-l] AlignIO::emboss   nabula easter
• [Bioperl-l] pairwise alignment options   Jason Stajich
• [Bioperl-l] Re: Installing Bioperl on Windows 98 [AND] Cygwin vs ActiveState Perl Programs   Elizabeth Bowen
  • [Bioperl-l] Re: Installing Bioperl on Windows 98 [AND] Cygwin vs ActiveState Perl Programs   Chris Devers
    • [Bioperl-l] Re: Installing Bioperl on Windows 98 [AND] Cygwin vs ActiveState Perl Programs   Lincoln Stein
• [Bioperl-l] =?iso-8859-1?Q?=5BBioperl=2Dl=5D=20Pushing=20towards=201=2E0?=   =?iso-8859-1?Q?Steve=20Chervitz?=
  • [Bioperl-l] =?iso-8859-1?Q?=5BBioperl=2Dl=5D=20Pushing=20towards=201=2E0?=   Ewan Birney
    • [Bioperl-l] =?iso-8859-1?Q?=5BBioperl=2Dl=5D=20Pushing=20towards=201=2E0?=   Jason Stajich
• [Bioperl-l] =?iso-8859-1?Q?Re=3A=20=5BBioperl=2Dl=5D=20=5BBioperl=2Dl=5D=20Pushing=20towards=201=2E0?=   =?iso-8859-1?Q?Steve=20Chervitz?=
  • [Bioperl-l] remote blast job queuing   Jason Stajich
    • [Bioperl-l] =?iso-8859-1?Q?RE=3A=20remote=20blast=20job=20queuing?=   =?iso-8859-1?Q?Steve=20Chervitz?=
• [Bioperl-l] help   joe
• [Bioperl-l] A small lull in developers   Ewan Birney
• [Bioperl-l] counting sequences   David Messina
• [Bioperl-l] Purge command in SimpleAlign   jrest@umich.edu
  • [Bioperl-l] Purge command in SimpleAlign   Aaron J Mackey
  • [Bioperl-l] Purge command in SimpleAlign   Ewan Birney
• [Bioperl-l] Win32 bioperl PPM   Jason Stajich
• [Bioperl-l] CVS help   Roger Hall
• [Bioperl-l] Newbie question regarding the BioPerl Archive   Elizabeth Bowen
  • [Bioperl-l] Newbie question regarding the BioPerl Archive   Ewan Birney
    • [Bioperl-l] Newbie question regarding the BioPerl Archive   Ann Loraine
      • [Bioperl-l] class diagrams   Ann Loraine
      • [Bioperl-l] Newbie question regarding the BioPerl Archive   Jason Stajich
• [Bioperl-l] Re: Bioperl-l digest, Vol 1 #554 - 2 msgs   landman
• [Bioperl-l] Autoanswer messages   Muratet, Michael
• [Bioperl-l] Release candidate for 0.9.2   Ewan Birney
• [Bioperl-l] Report to Recipient(s)   QuinceOrchard/Genelogic%GENELOGIC@genelogic.com
• [Bioperl-l] Re:   Sigrid
• [Bioperl-l] ScanMail Message: To Recipient virus found and action taken.   Administrator
• [Bioperl-l] ScanMail Message: To Recipient virus found and action taken.   Administrator
• [Bioperl-l] InterScan NT Alert   postmaster
• bioperl online course [Re: [Bioperl-l] Pushing towards 1.0 ]   Osborne, Brian
• [Bioperl-l] (no subject)   Desmond Lim
• [Bioperl-l] Bioperl turorial all sold out at O'Reilly Bioinformatics conference !   Chris Dagdigian
• [Bioperl-l] Newbie request   Narahari, HK
• [Bioperl-l] bug #1040   Jason Stajich
• [Bioperl-l] Re: Searching the BioPerl Archive   Elizabeth Bowen
• [Bioperl-l] Newbie question regarding the BioPerl Archive   Elizabeth Bowen
  • [Bioperl-l] Newbie question regarding the BioPerl Archive   Chris Devers
• [Bioperl-l] Bioperl turorial all sold out at O'Reilly Bioinformatics conference !   Elizabeth Bowen
• [Bioperl-l] =?iso-8859-1?Q?New=20code=20?=   =?iso-8859-1?Q?Steve=20Chervitz?=
  • [Bioperl-l] =?iso-8859-1?Q?New=20code=20?=   Ewan Birney
    • [Bioperl-l] New code   Peter Schattner
      • [Bioperl-l] New code   Ewan Birney
    • [Bioperl-l] =?iso-8859-1?Q?New=20code=20?=   Jason Stajich
      • [Bioperl-l] =?iso-8859-1?Q?New=20code=20?=   Ewan Birney
    • [Bioperl-l] =?iso-8859-1?Q?New=20code=20?=   Chris Mungall
      • [Bioperl-l] =?iso-8859-1?Q?New=20code=20?=   Ewan Birney
  • [Bioperl-l] =?iso-8859-1?Q?New=20code=20?=   Aaron J Mackey
• [Bioperl-l] subclassing (?) BPLITE, etc.   Jonathan Epstein
  • [Bioperl-l] subclassing (?) BPLITE, etc.   Jason Stajich
• [Bioperl-l] StateMachine   Ewan Birney
  • [Bioperl-l] Re: StateMachine   Aaron J Mackey
• [Bioperl-l] =?iso-8859-1?Q?Re=3A=20=5BBioperl=2Dl=5D=20New=20code=20?=   =?iso-8859-1?Q?Steve=20Chervitz?=
• [Bioperl-l] Naming consistency and Bioperl future search result parsing   Jason Stajich
• [Bioperl-l] =?iso-8859-1?Q?New=20code=20?=   Elizabeth Bowen

Last message date: Mon Dec 31 20:42:54 2001
Archived on: Tue Jan 8 03:46:03 2002

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