[Bioperl-l] subclassing (?) BPLITE, etc.

[Jonathan Epstein]

Hi,

I need to parse a completely different type of blast output and fit it into one of the existing BioPerl blast frameworks (preferably either BLAST or bplite).  I'm having a lot of trouble figuring out where to create such a module (which will only be for my personal use, unfortunately), how to do the necessary subclassing, etc.

When I use this object based upon a proprietary file format, I want almost all of my application code to just look as though I was using traditional BioPerl objects.

Thanks in advance for any pointers,

- Jonathan




Jonathan Epstein                                Jonathan_Epstein@nih.gov
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