[Bioperl-l] storing and retrieving partial sequences

[Elia Stupka]

> 	Now, do you guys think this searchs could be performed faster with
> a different design or is that a problem that will probably affect any
> design (including bioperl-db: note Heikki's proposal for vioperl-db)?

Just to cast away initial doubts, what indexes are you using on that
table? If you don't have good indexes on the coordinates the query will
definitely take forever.

Maybe it is too obvious, but better to get rid of the obvious to start
with...

Elia

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