[Bioperl-l] bugfix for BPLite Expect. (0.7.0)

[Heikki Lehvaslaiho]

Hi David,

I put it into 0.7 branch but I doubt there will ever be an other 0.7
release. You probably found the fix from the head (at least the line is
identical) which has a large number of fixes to BPLite. 

If anyone has problems with BLAST parsing I recommend moving to development
releases (0.9) or even better to CVS head. BLAST parsing seems to be fast
moving area and the head is the only place you can find the latest fixes.

	-Heikki

David Martin wrote:
> 
> BioPerl 0.7.0
> 
> Line 105 in BPLite/Sbjct.pm now has
> 
>   if (not defined $p) {($p) = $scoreline =~ /Expect(?:\(\d\))? = (\S+)/}
> 
> which now works with tblastx.
> 
> Would someone please update the relevant CVS?
> 
> Many thanks.
> 
> ..d
> 
> ----------------------------------
> David Martin PhD
> Bioinformatics Scientific Officer
> Wellcome Trust Biocentre, Dundee
> ----------------------------------
> 
> _______________________________________________
> Bioperl-l mailing list
> Bioperl-l@bioperl.org
> http://bioperl.org/mailman/listinfo/bioperl-l

-- 
______ _/      _/_____________________________________________________
      _/      _/                      http://www.ebi.ac.uk/mutations/
     _/  _/  _/  Heikki Lehvaslaiho          heikki@ebi.ac.uk
    _/_/_/_/_/  EMBL Outstation, European Bioinformatics Institute
   _/  _/  _/  Wellcome Trust Genome Campus, Hinxton
  _/  _/  _/  Cambs. CB10 1SD, United Kingdom
     _/      Phone: +44 (0)1223 494 644   FAX: +44 (0)1223 494 468
___ _/_/_/_/_/________________________________________________________