May 2005 Archives by thread

• Messages sorted by: [ subject ] [ author ] [ date ]
• More info on this list...

Starting: Sun May 1 18:41:03 EST 2005
Ending: Tue May 31 09:33:46 EST 2005
Messages: 146

• [Bioperl-l] Re: Bio::DB::Query   Hilmar Lapp
• [Bioperl-l] PAML parsing: standard error?   Edward Chuong
  • [Bioperl-l] PAML parsing: standard error?   Jason Stajich
• [Bioperl-l] Problem retrieving sequences from NCBI   Diego Riano
• [Bioperl-l] v5.005 in INSTALL   James Gilbert
  • [Bioperl-l] v5.005 in INSTALL   Hilmar Lapp
  • [Bioperl-l] Megablast Ouput   Waibhav Tembe
    • [Bioperl-l] Megablast Ouput   Jason Stajich
      • [Bioperl-l] Megablast Ouput   Waibhav Tembe
• [Bioperl-l] Error writing out EMBL   michael watson (IAH-C)
  • [Bioperl-l] Error writing out EMBL   Hilmar Lapp
• [Bioperl-l] Rank index in Bio::Tools::Run::Vista   Alison Lee
• [Bioperl-l] Glyph question   Oliver Burren
  • [Bioperl-l] Glyph question   Lincoln Stein
• [Bioperl-l] Problem with parser blast!!!!   Glauber Wagner
• [Bioperl-l] SearchIO and fasta output   michael watson (IAH-C)
  • [Bioperl-l] SearchIO and fasta output   Jason Stajich
• [Bioperl-l] SearchIO and fasta output   michael watson (IAH-C)
  • [Bioperl-l] SearchIO and fasta output   Jason Stajich
    • [Bioperl-l] SearchIO and fasta output   Hilmar Lapp
  • [Bioperl-l] SearchIO and fasta output   Hilmar Lapp
• [Bioperl-l] using graphics xyplot   Samuel W. Cartinhour
• [Bioperl-l] Committed HMM module   Yee Man Chan
• [Bioperl-l] How to run hmmpfam   Wang Lixiao
• [Bioperl-l] How to run hmmpfam   Marc Logghe
• [Bioperl-l] ESTScan Query   Sean.Maceachern at dpi.vic.gov.au
  • [Bioperl-l] ESTScan Query   James Wasmuth
• [Bioperl-l] use base;   Hilmar Lapp
• [Bioperl-l] Bio::SeqFeature::Annotated   Hilmar Lapp
• [Bioperl-l] Problems with Bio/Graphics/Feature.pm   michael watson (IAH-C)
  • [Bioperl-l] Problems with Bio/Graphics/Feature.pm   Jason Stajich
• [Bioperl-l] ContigAnalysis   SRMD, Col - Underwood, Anthony
• [Bioperl-l] Passing extra arguments to method references in Bio::Graphics::Panel::add_track   michael watson (IAH-C)
• [Bioperl-l] RE: Passing extra arguments to method references in Bio::Graphics::Panel::add_track   michael watson (IAH-C)
  • [Bioperl-l] RE: Passing extra arguments to method references in Bio::Graphics::Panel::add_track   Lincoln Stein
• [Bioperl-l] RE: Passing extra arguments to method references inBio::Graphics::Panel::add_track   Crabtree, Jonathan
• [Bioperl-l] write_sequence   Ferdinand Marlétaz
  • [Bioperl-l] write_sequence   Josh Lauricha
• [Bioperl-l] write_sequence]   Paulo Almeida
• [Bioperl-l] Problems with Bio/Graphics/Feature.pm   michael watson (IAH-C)
  • [Bioperl-l] Problems with Bio/Graphics/Feature.pm   Jason Stajich
• [Bioperl-l] StandAloneBlast or bl2seq quietly converts Ns to Ts   Sam Kalat
  • [Bioperl-l] StandAloneBlast or bl2seq quietly converts Ns to Ts   Jason Stajich
• [Bioperl-l] Bio::SeqIO::staden::read make test error   Roy Chaudhuri
  • [Bioperl-l] Bio::SeqIO::staden::read make test error   Aaron J. Mackey
    • [Bioperl-l] Bio::SeqIO::staden::read make test error   Roy Chaudhuri
      • [Bioperl-l] Bio::SeqIO::staden::read make test error   Aaron J. Mackey
      • [Bioperl-l] Bio::SeqIO::staden::read make test error   Roy Chaudhuri
      • [Bioperl-l] Bio::SeqIO::staden::read make test error   Aaron J. Mackey
      • [Bioperl-l] Bio::SeqIO::staden::read make test error   Roy Chaudhuri
  • [Bioperl-l] Bio::SeqIO::staden::read make test error   Phillip San Miguel
• [Bioperl-l] Bio::SearchIO::amps and Bio::SearchIO::mrbayes_nexus   Matthew Betts
  • [Bioperl-l] Re: Bio::SearchIO::amps and Bio::SearchIO::mrbayes_nexus   Matthew Betts
    • [Bioperl-l] Re: Bio::SearchIO::amps and Bio::SearchIO::mrbayes_nexus   Jason Stajich
  • [Bioperl-l] Bio::SearchIO::amps and Bio::SearchIO::mrbayes_nexus   Nathan Haigh
• [Bioperl-l] web alignment format conversion?   Matthew Betts
• [Bioperl-l] RE: Passing extra arguments to method references inBio::Graphics::Panel::add_track   michael watson (IAH-C)
• [Bioperl-l] [help] bl2seq using blastp   aplykimo
• [Bioperl-l] RE: Passing extra arguments to method references inBio::Graphics::Panel::add_track   Crabtree, Jonathan
• [Bioperl-l] AlignIO::* match_char, gap_char and missing_char etc   Nathan Haigh
• [Bioperl-l] Odd behaviour in Bio::SeqFeature::Gene::Transcript   Oliver Burren
  • [Bioperl-l] Odd behaviour in Bio::SeqFeature::Gene::Transcript   Jason Stajich
    • [Bioperl-l] Odd behaviour in Bio::SeqFeature::Gene::Transcript   Oliver Burren
• [Bioperl-l] Primer 3: MSG: Can't open RESULTS   Gregory Drake Wilson
  • [Bioperl-l] Primer 3: MSG: Can't open RESULTS   Greg Wilson
    • [Bioperl-l] Primer 3: MSG: Can't open RESULTS   Jason Stajich
      • [Bioperl-l] Primer 3: MSG: Can't open RESULTS   Greg Wilson
• [Bioperl-l] Changes to SearchIO/Writer/GbrowseGFF.pm   Susan J. Miller
• [Bioperl-l] Number of internal nodes on a tree   Goel, Manisha
  • [Bioperl-l] Number of internal nodes on a tree   Jason Stajich
• [Bioperl-l] [help] bl2seq using blastp   Madeleine Lemieux
• [Bioperl-l] Grail Tool   Alan R Williams
• [Bioperl-l] error parsing -m8 blast output   Arya Akmal
  • [Bioperl-l] error parsing -m8 blast output   Jason Stajich
• [Bioperl-l] about pI prediction   Frank
• [Bioperl-l] about pI prediction   Marc Logghe
  • [Bioperl-l] about pI prediction   Brian Osborne
    • [Bioperl-l] about pI prediction   Frank
      • [Bioperl-l] about pI prediction   Conrad Halling
      • [Bioperl-l] about pI prediction   Frank
      • [Bioperl-l] about pI prediction   jun hu
• [Bioperl-l] about pI prediction   Ewing, Adam D.
• [Bioperl-l] Where has BioPerl been used   Daniel Park
  • [Bioperl-l] Where has BioPerl been used   Ed Green
• [Bioperl-l] Bio::Tools::ESTScan and ESTScan v2.0 beta   Samuel Thoraval
• [Bioperl-l] load_seqdatabase.pl   Baohua Wang
• [Bioperl-l] Updated Bio::Tools::Spidey::Exon.pm and test modules   Ryan Golhar
• [Bioperl-l] RE: Updated Bio::Tools::Spidey::Exon.pm and test modules   Ryan Golhar
• [Bioperl-l] Extracting a particular feature from a sequence   michael watson (IAH-C)
  • [Bioperl-l] weird behavior of arrary reference arguments for a subroutine   Guojun Yang
    • [Bioperl-l] weird behavior of arrary reference arguments for a subroutine   Andreas Kahari
    • [Bioperl-l] weird behavior of arrary reference arguments for a subroutine   Paulo Almeida
  • [Bioperl-l] Extracting a particular feature from a sequence   Fernan Aguero
• [Bioperl-l] Extracting a particular feature from a sequence   Marc Logghe
• [Bioperl-l] Extracting a particular feature from a sequence   michael watson (IAH-C)
• [Bioperl-l] Extracting a particular feature from a sequence   Marc Logghe
• [Bioperl-l] Bio::Ontology fails test with current SOFA   Scott Cain
• [Bioperl-l] Extracting a particular feature from a sequence   Marc Logghe
• [Bioperl-l] The Scriptome: a minimal-learning toolbox for manipulating biolog ical data   Amir Karger
• [Bioperl-l] How to change a row/column name in Bio::Matrix::Generic.pm?   Sally Li
  • [Bioperl-l] How to change a row/column name in Bio::Matrix::Generic.pm?   Jason Stajich
• [Bioperl-l] is there local alignment module in bioperl?   wangqi
  • [Bioperl-l] is there local alignment module in bioperl?   Edward WIJAYA
• [Bioperl-l] Equivalence Between SmithWaterman and Edit distance   Waibhav Tembe
• [Bioperl-l] Bio::Graphics::Panel   Lincoln Stein
• [Bioperl-l] Bio::Graphics::Glyph::triangle   Lincoln Stein
• [Bioperl-l] help needed Was:Re: [Gmod-gbrowse] negative numbers in xyplot   Lincoln Stein
• [Bioperl-l] wu-blast and bioperl   Tuan A. Tran
  • [Bioperl-l] wu-blast and bioperl   Jason Stajich
• [Bioperl-l] Drawing sequences in the "other" direction   michael watson (IAH-C)
• [Bioperl-l] SearchIO newbie question   Melodee Patterson
  • [Bioperl-l] SearchIO newbie question   Jason Stajich
  • [Bioperl-l] SearchIO newbie question   James Wasmuth
  • [Bioperl-l] SearchIO newbie question   Andrew Walsh
    • [Bioperl-l] SearchIO newbie question   Melodee Patterson
• [Bioperl-l] Re: Bio::Matrix::PSM::PsmHeader   Stefan Kirov
• [Bioperl-l] convert fasta output to blast -m8?   Amir Karger
  • [Bioperl-l] convert fasta output to blast -m8?   Jason Stajich
• [Bioperl-l] Convert Fasta to Phylip   Ferdinand Marlétaz
• [Bioperl-l] Convert Fasta to Phylip   Ferdinand Marlétaz
  • [Bioperl-l] Convert Fasta to Phylip   Jason Stajich
• [Bioperl-l] Volunteers to contributions of Perl code   Marcelo bertalan
  • [Bioperl-l] Volunteers to contributions of Perl code   Allen Day
• [Bioperl-l] Graphical Debugger for Linux   Ryan Golhar
  • [Bioperl-l] Graphical Debugger for Linux   Brian Osborne
  • [Bioperl-l] Graphical Debugger for Linux   Jonathan Epstein
    • [Bioperl-l] Graphical Debugger for Linux   Lincoln Stein
  • [Bioperl-l] Graphical Debugger for Linux   Andreas Kahari
• [Bioperl-l] Graphical Debugger for Linux   Chervitz, Steve
• [Bioperl-l] Newbie question: How should I report bugs / suggested changes i.e. in Bio::Matrix::Generic?   Wiersma, Paul
• [Bioperl-l] sequence alignment modules   Melodee Patterson
• [Bioperl-l] ribosome binding sites (RBS)   Genevieve DeClerck
  • [Bioperl-l] ribosome binding sites (RBS)   Fernan Aguero
• [Bioperl-l] [Fwd: Human pathway database survey]   Stefan Kirov
• [Bioperl-l] Convert Fasta to Phylip   Jason Stajich
• [Bioperl-l] please help me to check why this perl script does not work!   Fei Li
• [Bioperl-l] please help me to check why this perl script does notwork!   Marc Logghe
  • [Bioperl-l] please help me to check why this perl script does notwork!   Fei Li
• [Bioperl-l] ORF scan   Fei Li
  • [Bioperl-l] ORF scan   Paul G Cantalupo
• [Bioperl-l] please help me to check why this perl script does notwork!   Marc Logghe
• [Bioperl-l] please help me to check why this perl script does notwork!   Fei Li
• [Bioperl-l] Reroot Tree ?   Ferdinand Marlétaz
• [Bioperl-l] Fwd: bioperl for fasta searches   Aaron J. Mackey
• [Bioperl-l] B, Z, N, X in refseq   Fei Li
  • [Bioperl-l] [BiO BB] B, Z, N, X in refseq   Boris Steipe

Last message date: Tue May 31 09:33:46 EST 2005
Archived on: Fri Jun 3 09:56:00 EST 2005

• Messages sorted by: [ subject ] [ author ] [ date ]
• More info on this list...