[Bioperl-l] Rank index in Bio::Tools::Run::Vista

[Alison Lee]

Dear Bioperl Developers

I would like to ask about Bio::Tools::Run::Vista. 

The regular expression at Line 365 /\d+/ which is meant to detect rank indexes, does not seem to preclude seqids with digits. Should it be modified to /^\d+$/?

Also, lines 367 and 368 should be swapped.

Lastly, can the Vista option "FILENAME" be added? 

Thanks.

Regards
Alison.

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