[Bioperl-l] Megablast Ouput

[Jason Stajich]

Bio::SearchIO::blast will parse MEGABLAST output the -D 0 and -D 2 
formats.

-jason

On May 3, 2005, at 11:40 AM, Waibhav Tembe wrote:

> Hello List,
>
> I was wondering if BioPerl parse routines from BLAST output could be 
> used for megablast output as well (assuming that the display format 
> for megablast output has been set to BLAST like output).
>
> Secondly, if the output display format (-m parameter) for blastall is 
> changed, is it still possible to use BioPerl blast output parsers to 
> extract hits/HSPs/Evalue etc?
>
> Thanks.
>
> Regards,
>
> -waibhav
>
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--
Jason Stajich
jason.stajich at duke.edu
http://www.duke.edu/~jes12/