[Bioperl-l] ContigAnalysis

[SRMD, Col - Underwood, Anthony]

Please can anybody confirm which methods should work in the
Bio::Assembly::ContigAnalysis module.
It seems to me that single_strand method does not work, whereas
low_consensus_quality does?  Is there a method that is implemented and will
find regiosn that are not double-stranded? Would the
not_confirmed_on_both_strands method work?
 
Many thanks,
 
Anthony
 
Dr Anthony Underwood
Bioinformatics Group | Genomics, Proteomics and Bioinformatics Unit
Centre for Infections
Health Protection Agency
61 Colindale Avenue
London
NW9 5HT
t: 0208 3276466  f: 0208 3276738  e:anthony.underwood at hpa.org.uk
 



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