2001-October Archives by Date

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Starting: Mon Oct 1 14:20:40 2001
Ending: Wed Oct 31 20:30:32 2001
Messages: 210

• [Bioperl-l] Re: Comparative genomics   Daniel Barker
• [Bioperl-l] test writing feedback, new modules   Jason Eric Stajich
• [Bioperl-l] Comparative genomics   Arlin Stoltzfus
• [Bioperl-l] retrieve old sequence versions   Heikki Lehvaslaiho
• [Bioperl-l] retrieve old sequence versions   francis@cmmt.ubc.ca
• [Bioperl-l] Initial commit of Bio::Tools::Lucy   Andrew Walsh
• [Bioperl-l] Bug in Bio::Tools::BPlite.pm ?   Jason Eric Stajich
• [Bioperl-l] (pas d'objet)   gregory lefebvre
• [Bioperl-l] RE: Comparative genomics - regions of synteny and whole genome duplication   Alexander Kozik
• [Bioperl-l] Comparative genomics - regions of synteny and whole genome duplication   Lukasz Huminiecki
• [Bioperl-l] Re: Comparative genomics - regions of synteny and whole genome duplication   Elia Stupka
• [Bioperl-l] Re: Comparative genomics - regions of synteny and whole genome duplication   Elia Stupka
• [Bioperl-l] Re: Comparative genomics - regions of synteny and whole genome duplication   Elia Stupka
• [Bioperl-l] Comparative genomics - regions of synteny and whole genome duplication   Ian Korf
• [Bioperl-l] Re: Comparative genomics - regions of synteny and whole genome duplication   Richard Copley
• [Bioperl-l] RE: Comparative genomics - regions of synteny and whole genome duplication   Elia Stupka
• [Bioperl-l] Re: Comparative genomics - regions of synteny and whole genome duplication   Elia Stupka
• [Bioperl-l] Re: Comparative genomics - regions of synteny and whole genome duplication   Richard Copley
• [Bioperl-l] Re: Question of Bioperl pm Bio::Tools::StandAloneBlast   Peter Schattner
• [Bioperl-l] Re: Comparative genomics - regions of synteny and whole genome duplication   Ian Holmes
• [Bioperl-l] Re: Comparative genomics - regions of synteny and whole genome duplication   Jim Kent
• [Bioperl-l] Re: Comparative genomics - regions of synteny and whole genome duplication   Richard Copley
• [Bioperl-l] Re: Comparative genomics - regions of synteny and whole genome duplication   Jim Kent
• [Bioperl-l] Local database building   Jason Raymond
• [Bioperl-l] Local database building   Heikki Lehvaslaiho
• [Bioperl-l] Local database building   Jason Raymond
• [Bioperl-l] (no subject)   Marcel van Batenburg
• [Bioperl-l] Local database building   Heikki Lehvaslaiho
• [Bioperl-l] SeqIO problem on fasta file with large number of sequences.   Kun Zhang
• [Bioperl-l] [Bioperl-guts-l] Notification: incoming/1016 (fwd)   Jason Eric Stajich
• [Bioperl-l] SeqIO problem on fasta file with large number of sequences.   Jason Eric Stajich
• [Bioperl-l] With regard to Bsml and Agave modules...   Jean-Jack M. Riethoven
• [Bioperl-l] 0.7.2   Ewan Birney
• [Bioperl-l] With regard to Bsml and Agave modules...   Charles Tilford
• [Bioperl-l] 0.7.2   Heikki Lehvaslaiho
• [Bioperl-l] test writing feedback, new modules   Chad Matsalla
• [Bioperl-l] genbank alternate-splicing representation   Mark Wilkinson
• [Bioperl-l] 0.7.2   Jason Eric Stajich
• [Bioperl-l] genbank alternate-splicing representation   Chris Mungall
• [Bioperl-l] Request for direction... was: genbank alternate-splicing representation   Mark Wilkinson
• [Bioperl-l] Request for direction... was: genbank alternat e-splicing representation   Malcolm Cook
• [Bioperl-l] Request for direction... was: genbank alternate-splicing representation   francis@cmmt.ubc.ca
• [Bioperl-l] RootI->debug method   Jason Eric Stajich
• [Bioperl-l] test writing feedback, new modules   Jason Eric Stajich
• [Bioperl-l] Request for direction   Manjunath Ranganathappa
• [Bioperl-l] RootI->debug method   Ewan Birney
• [Bioperl-l] Re: Bioperl tree class   Elia Stupka
• [Bioperl-l] Request for direction...   Mark Wilkinson
• [Bioperl-l] Request for direction...   Ewan Birney
• [Bioperl-l] Re: Bioperl tree class   Richard Copley
• [Bioperl-l] Request for direction...   Mark Wilkinson
• [Bioperl-l] Getting subject length with BPlite   Alexandre Irrthum
• [Bioperl-l] Re: Bioperl tree class   Jason Eric Stajich
• [Bioperl-l] Re: [Bioperl-guts-l] Notification: incoming/1015   Jason Eric Stajich
• [Bioperl-l] Request for direction...   Malcolm Cook
• [Bioperl-l] Getting subject length with BPlite   Jason Eric Stajich
• [Bioperl-l] bugs in the queue   Jason Eric Stajich
• [Bioperl-l] patch for Bio::SeqIO:embl.pm - read/write 'secondary accession nu mbers'   Malcolm Cook
• [Bioperl-l] patch for Bio::SeqIO:embl.pm - read/write 'secondary accession nu mbers'   Malcolm Cook
• [Bioperl-l] Simple question w/ BPLite   Tomso.Daniel
• [Bioperl-l] SeqIO problem on fasta file with large number of sequences.   Kun Zhang
• [Bioperl-l] SeqIO problem on fasta file with large number of sequences.   Jason Eric Stajich
• [Bioperl-l] pI of proteins   Jay Hesselberth
• [Bioperl-l] Re: Bioperl tree class   Malay
• [Bioperl-l] StandAloneBlast -> bl2seq case   Marcel van Batenburg
• erratum: [Bioperl-l] StandAloneBlast -> bl2seq case   Marcel van Batenburg
• [Bioperl-l] clustalw output format   Jason Eric Stajich
• [Bioperl-l] Re: Bioperl tree class   Heikki Lehvaslaiho
• [Bioperl-l] bioperl class diagrams   Jason Eric Stajich
• [Bioperl-l] StandAloneBlast -> bl2seq case   Peter Schattner
• [Bioperl-l] clustalw output format   Peter Schattner
• [Bioperl-l] Uniform syntax for Run objects   Peter Schattner
• [Bioperl-l] clustalw output format   Jason Eric Stajich
• [Bioperl-l] Revising and updating the bioperl tutorial   Peter Schattner
• [Bioperl-l] clustalw output format updated   Jason Eric Stajich
• [Bioperl-l] Revising and updating the bioperl tutorial   chris dagdigian
• [Bioperl-l] Boulder::Unigene   Deborah Simon
• Revisited... Re: [Bioperl-l] Request for direction...   Mark Wilkinson
• [Bioperl-l] How to check mRNA moltype?   Hong Lu
• [Bioperl-l] StandAloneBlast -> bl2seq case   Peter Schattner
• [Bioperl-l] Local parsing code   Jason Raymond
• [Bioperl-l] How to check mRNA moltype?   Heikki Lehvaslaiho
• [Bioperl-l] How to check mRNA moltype?   Ewan Birney
• [Bioperl-l] How to check mRNA moltype?   Mark Wilkinson
• [Bioperl-l] How to check mRNA moltype?   Mark Wilkinson
• [Bioperl-l] How to check mRNA moltype?   Heikki Lehvaslaiho
• [Bioperl-l] RE: How to check mRNA   Lifeng Tian
• [Bioperl-l] RE: How to check mRNA   Heikki Lehvaslaiho
• [Bioperl-l] RE: How to check mRNA   Ewan Birney
• [Bioperl-l] How to check mRNA moltype?   Heikki Lehvaslaiho
• [Bioperl-l] RE: How to check mRNA   Heikki Lehvaslaiho
• [Bioperl-l] RE: How to check mRNA   Ewan Birney
• [Bioperl-l] How to check mRNA moltype?   Hong Lu
• [Bioperl-l] How to check mRNA moltype?   Hong Lu
• [Bioperl-l] moltype/molecule   Heikki Lehvaslaiho
• [Bioperl-l] Bio::SeqIO   Loerch, Patrick
• [Bioperl-l] parse psiblast reports   Geetha Vasudevan
• [Bioperl-l] Bio::SeqIO   Malcolm Cook
• [Bioperl-l] Blast reports and XML   Wiepert, Mathieu
• [Bioperl-l] RFC: Bio::SearchIO and Bio::Search::* objects   Jason Eric Stajich
• [Bioperl-l] option for stupid translation   Elia Stupka
• [Bioperl-l] Blast parsing exception   Marc Logghe
• [Bioperl-l] option for stupid translation   Heikki Lehvaslaiho
• [Bioperl-l] Problems with bioperl-db   Alex Zelensky
• [Bioperl-l] option for stupid translation   Ewan Birney
• [Bioperl-l] option for stupid translation   Elia Stupka
• [Bioperl-l] option for stupid translation   Ewan Birney
• [Bioperl-l] Problems with bioperl-db   Elia Stupka
• [Bioperl-l] option for stupid translation   Heikki Lehvaslaiho
• [Bioperl-l] moltype/molecule ; circular sequences!   Heikki Lehvaslaiho
• [Bioperl-l] bioperl-db bugs   Elia Stupka
• [Bioperl-l] option for stupid translation   Elia Stupka
• [Bioperl-l] Problems with bioperl-db   Elia Stupka
• [Bioperl-l] bioperl-db bugs   Jason Eric Stajich
• [Bioperl-l] bioperl-db bugs   Elia Stupka
• [Bioperl-l] Problems with bioperl-db   Elia Stupka
• [Bioperl-l] anyone see the new ORA beginning bioinformatics/perl book?   chris dagdigian
• [Bioperl-l] Blast parsing exception   Marc Logghe
• [Bioperl-l] parse psiblast reports   Peter Schattner
• [Bioperl-l] Problems with bioperl-db   Alex Zelensky
• [Bioperl-l] Problems with bioperl-db   Elia Stupka
• [Bioperl-l] TBLAST Parsing   Jason Raymond
• [Bioperl-l] anyone see the new ORA beginning bioinformatics/perl book?   Jeffrey Chang
• [Bioperl-l] TBLAST Parsing   Jason Eric Stajich
• [Bioperl-l] RFC: Bio::SearchIO and Bio::Search::* objects   Jason Eric Stajich
• [Bioperl-l] TBLAST Parsing   jasonraymond
• [Bioperl-l] RFC: Bio::SearchIO and Bio::Search::* objects   Ewan Birney
• [Bioperl-l] RFC: Bio::SearchIO and Bio::Search::* objects   Ewan Birney
• [Bioperl-l] RFC: Bio::SearchIO and Bio::Search::* objects   Thomas Down
• [Bioperl-l] RFC: Bio::SearchIO and Bio::Search::* objects   Jason Eric Stajich
• [Bioperl-l] Re: perl code   Ewan Birney
• [Bioperl-l] BLAST AND SEQUENCE RETRIEVAL   Pedro A Reche Gallardo
• [Bioperl-l] Blast parsing exception   Hilmar Lapp
• [Bioperl-l] moltype/molecule   Hilmar Lapp
• [Bioperl-l] Blast parsing exception   Marc Logghe
• [Bioperl-l] BLAST AND SEQUENCE RETRIEVAL   Heikki Lehvaslaiho
• [Bioperl-l] moltype() -> alphabet()   Heikki Lehvaslaiho
• [Bioperl-l] anyone see the new ORA beginning bioinformatics/perl book?   Ian Korf
• [Bioperl-l] Any interest in a Bioperl parser for the RNAMOT program?   Peter Schattner
• [Bioperl-l] writing sequences to a file   Jason Raymond
• [Bioperl-l] writing sequences to a file   Jason Eric Stajich
• [Bioperl-l] Sequence IDs and Comment()s   Charles Tilford
• [Bioperl-l] Translate to 6 ORF's   Wiepert, Mathieu
• [Bioperl-l] Sequence IDs and Comment()s   Jason Eric Stajich
• [Bioperl-l] Translate to 6 ORF's   Heikki Lehvaslaiho
• [Bioperl-l] Sequence IDs and Comment()s   Ewan Birney
• [Bioperl-l] parsing tblastn using BPlite   Christoffels Alan
• [Bioperl-l] Sequence IDs and Comment()s   Hilmar Lapp
• [Bioperl-l] parsing tblastn using BPlite   Jason Eric Stajich
• [Bioperl-l] Sequence IDs and Comment()s   Charles Tilford
• [Bioperl-l] Opening up deleting features from Seq objects again   David Block
• [Bioperl-l] parsing tblastn using BPlite   Christoffels Alan
• [Bioperl-l] parsing tblastn using BPlite   Jason Eric Stajich
• [Bioperl-l] Opening up deleting features from Seq objects again   Ewan Birney
• [Bioperl-l] parsing tblastn using BPlite   Christoffels Alan
• [Bioperl-l] Information   junejaalok
• [Bioperl-l] parsing tblastn using BPlite   Jason Eric Stajich
• [Bioperl-l] Translate to 6 ORF's   Heikki Lehvaslaiho
• [Bioperl-l] Opening up deleting features from Seq objects again   David Block
• [Bioperl-l] Translate to 6 ORF's   Wiepert, Mathieu
• [Bioperl-l] Opening up deleting features from Seq objects again   Ewan Birney
• [Bioperl-l] Opening up deleting features from Seq objects again   Ewan Birney
• [Bioperl-l] mailing list   Wang Jifeng
• [Bioperl-l] parsing tblastn using BPlite   Christoffels Alan
• [Bioperl-l] mailing list   Heikki Lehvaslaiho
• [Bioperl-l] Opening up deleting features from Seq objects again   Hilmar Lapp
• [Bioperl-l] [Fwd: [Bioperl-guts-l] Notification: incoming/1023]   Heikki Lehvaslaiho
• [Bioperl-l] parsing tblastn using BPlite   Jason Eric Stajich
• [Bioperl-l] StandAloneBlast.pm question   Andrew Emerson
• [Bioperl-l] StandAloneBlast.pm question   Bin Qian
• [Bioperl-l] StandAloneBlast.pm question   Peter Schattner
• [Bioperl-l] Event generated parsing   Jason Eric Stajich
• [Bioperl-l] parsing tblastn using BPlite   Chervitz, Steve
• [Bioperl-l] parsing tblastn using BPlite   Jason Eric Stajich
• [Bioperl-l] parsing tblastn using BPlite   Chervitz, Steve
• [Bioperl-l] parsing tblastn using BPlite   Jason Eric Stajich
• [Bioperl-l] XML blast parsing (was parsing tblastn using BPlite)   Wiepert, Mathieu
• [Bioperl-l] parsing psiblast report...   Geetha Vasudevan
• [Bioperl-l] Need Help: 0.7.2 and 0.9.1 tests and preparations   Jason Eric Stajich
• [Bioperl-l] Need Help: 0.7.2 and 0.9.1 tests and preparations   Hilmar Lapp
• [Bioperl-l] Need Help: 0.7.2 and 0.9.1 tests and preparations   Jason Eric Stajich
• [Bioperl-l] Need Help: 0.7.2 and 0.9.1 tests and preparations   chris dagdigian
• [Bioperl-l] Need Help: 0.7.2 and 0.9.1 tests and preparations   nirav@public.arl.arizona.edu
• [Bioperl-l] parsing psiblast report...   Peter Schattner
• [Bioperl-l] Need Help: 0.7.2 and 0.9.1 tests and preparations   Mark Dalphin
• [Bioperl-l] Need Help: 0.7.2 and 0.9.1 tests and preparations   Jurgen Pletinckx
• [Bioperl-l] Need Help: 0.7.2 and 0.9.1 tests and preparations   Jason Eric Stajich
• [Bioperl-l] Need Help: 0.7.2 and 0.9.1 tests and preparations   Jason Eric Stajich
• [Bioperl-l] New Annotation interfaces! Mark/David/whoever - check it out!   Ewan Birney
• [Bioperl-l] New Annotation interfaces! Mark/David/whoever - check it out!   Mark Wilkinson
• [Bioperl-l] want to bring tools together to help small labs   T.D. Houfek
• [Bioperl-l] New Annotation interfaces!   Hilmar Lapp
• [Bioperl-l] New Annotation interfaces!   Chris Mungall
• [Bioperl-l] New Annotation interfaces!   Hilmar Lapp
• [Bioperl-l] New Annotation interfaces! Mark/David/whoever - check it out!   Chris Mungall
• [Bioperl-l] unsubscribe   Syamala Bandi
• [Bioperl-l] New commits   Tony Cox
• [Bioperl-l] operator overloading: Seq->subseq & Seq->trim   Jason Eric Stajich
• [Bioperl-l] operator overloading: Seq->subseq & Seq->trim   Ewan Birney
• [Bioperl-l] operator overloading: Seq->subseq & Seq->trim   Jason Eric Stajich
• [Bioperl-l] operator overloading: Seq->subseq & Seq->trim   Ewan Birney
• [Bioperl-l] Need Help: 0.7.2 and 0.9.1 tests and preparations   gert thijs
• [Bioperl-l] Getting refseq (contigs) from Genbank   Wiepert, Mathieu
• [Bioperl-l] important change for Bio::SeqIO::GenBank   Wang, Kai
• [Bioperl-l] Getting refseq (contigs) from Genbank   Jason Eric Stajich
• [Bioperl-l] important change for Bio::SeqIO::GenBank   Heikki Lehvaslaiho
• [Bioperl-l] Parsing Blast output for nohit sequences   Sammons, Scott
• [Bioperl-l] Getting refseq (contigs) from Genbank   Wiepert, Mathieu
• [Bioperl-l] Getting refseq (contigs) from Genbank   Jason Eric Stajich
• [Bioperl-l] important change for Bio::SeqIO::GenBank   Wang, Kai

Last message date: Wed Oct 31 20:30:32 2001
Archived on: Wed Oct 31 23:27:03 2001

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