[Bioperl-l] RE: Comparative genomics - regions of synteny and whole genome
Wed, 03 Oct 2001 10:01:15 +0000
I enjoy this discussion about orthologues, paralogues and whole genome
There is a program GenomePixelizer for comparative genomics.
It does allow to view gene relationship between genomes based on
This type of visualization may help to think about the origin of gene
It is written in Tcl/Tk. However it may be re-written in Perl/Tk.
The weak side of GenomePixelizer is an absence of automatic pipeline
generates distance matrix file from Blast, Fasta or ClustalW output.
This is the place where BioPerl could really help.
Sorry if this message is out of topic.
Department of Vegetable Crops
University California at Davis
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