[Bioperl-l] moltype/molecule

[Hilmar Lapp]

Heikki Lehvaslaiho wrote:
> 
> 
> - add new method into PrimarySeqI: is_circular (HEAD)
>   -- values (from ID/LOCUS line): undef/false, true
>   -- update genbank.pm and embl.pm to parse in circularity
>   -- update genbank.pm and embl.pm to write out circularity
> 

Sounds good.

> - change moltype() into alphabet(), keep moltype() as a depreciated method
>   (HEAD only) Opinions?

Hm. I bet a /lot/ of people have been using $seq->moltype().
alphabet() sounds like the better name though. No-one's been
shouting so far ...

	-hilmar

-- 
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Hilmar Lapp                              email: hilmarl@yahoo.com
San Diego, Ca. 92130                     phone: +1 858 812 1757
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