[Bioperl-l] Re: [Bioperl-guts-l] Notification: incoming/1015

[Jason Eric Stajich]

I checked in code that *should* fix this - on bioperl 0.7 branch on in CVS
head.  Would be grateful if you would help us out by testing my changes
before we release to be sure we have squashed this bug.  Feel free to
contact us if you have trouble downloading via CVS: see
http://cvs.bioperl.org for more information.

-jason

On Wed, 3 Oct 2001 bioperl-bugs@bioperl.org wrote:

> JitterBug notification
>
> new message incoming/1015
>
> Message summary for PR#1015
> 	From: alastair.kerr@cereon.com
> 	Subject: parsing hmmpfam 2.1.2
> 	Date: Wed, 3 Oct 2001 14:36:41 -0400
> 	0 replies 	0 followups
>
> ====> ORIGINAL MESSAGE FOLLOWS <====
>
> >From alastair.kerr@cereon.com Wed Oct  3 14:36:41 2001
> Received: from localhost (localhost [127.0.0.1])
> 	by pw600a.bioperl.org (8.11.2/8.11.2) with ESMTP id f93Iafp20945
> 	for <bioperl-bugs@pw600a.bioperl.org>; Wed, 3 Oct 2001 14:36:41 -0400
> Date: Wed, 3 Oct 2001 14:36:41 -0400
> Message-Id: <200110031836.f93Iafp20945@pw600a.bioperl.org>
> From: alastair.kerr@cereon.com
> To: bioperl-bugs@bioperl.org
> Subject: parsing hmmpfam 2.1.2
>
> Full_Name: Alastair Kerr
> Module: Bio::Tools::HMMER::Results
> Version: 0.7.1
> PerlVer: 5.6.0
> OS: SunOS
> Submission from: (NULL) (65.201.51.2)
>
>
> The following:
>
> $res =
> Bio::Tools::HMMER::Results->new( -file => $filename,  -type => 'hmmpfam');
>
>
> Works with the following version of hmmpfam:
>
> hmmpfam - search a single seq against HMM database
> HMMER 2.1.1 (Dec 1998)
>
>
> but not with this version:
>
>
>
> hmmpfam - search a single seq against HMM database
> HMMER 2.1.2 (May 1999)
>
>
>
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>

-- 
Jason Stajich
Duke University
jason@cgt.mc.duke.edu