[Bioperl-l] BLAST AND SEQUENCE RETRIEVAL

Pedro A Reche Gallardo reche@research.dfci.harvard.edu
Sun, 21 Oct 2001 20:42:12 -0400 

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Hi all, I know that is possible to use the bioperl modules to parse a
blast output result taking the GI of the sequences, but  I wonder if
there is a procedure for retrieving the corresponding sequences from a
local or remote database. It will be great if I someone could show me
how to do this.
Best regards,

Pedro Reche
 ***************************************************************************
PEDRO a. RECHE gallardo, pHD            TL: 617 632
3824
Scientist, Mol.Immnunol.Foundation,     FX: 617 632 3351
Dana-Farber Cancer Institute,           EM:
reche@research.dfci.harvard.edu
Harvard Medical School,                 EM:
reche@mifoundation.org
44 Binney Street, D610C,                URL:
http://www.reche.org
Boston, MA 02115
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<tt>Hi all, I know that is possible to use the bioperl modules to parse
a blast output result taking the GI of the sequences, but&nbsp; I wonder
if there is a procedure for retrieving the corresponding sequences from
a local or remote database. It will be great if I someone could show me
how to do this.</tt>
<br><tt>Best regards,</tt><tt></tt>
<p><tt>Pedro Reche</tt>
<br><tt>&nbsp;***************************************************************************<br>
PEDRO a. RECHE gallardo, pHD&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
TL: 617 632 3824&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;<br>
Scientist, Mol.Immnunol.Foundation,&nbsp;&nbsp;&nbsp;&nbsp; FX: 617 632
3351<br>
Dana-Farber Cancer Institute,&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
EM: reche@research.dfci.harvard.edu<br>
Harvard Medical School,&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
EM: reche@mifoundation.org&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;<br>
44 Binney Street, D610C,&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
URL: <A HREF="http://www.reche.org">http://www.reche.org</A>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;<br>
Boston, MA 02115&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;<br>
***************************************************************************</tt>
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