[Bioperl-l] Re: Bioperl tree class

[Jason Eric Stajich]

We do have a PHYLIP reading/writing object -
Bio::AlignIO::phylip

and I actually just used it yesterday for some things and I'm not sure it
is 100% up to all the standards, but definitely a great start if you find
and problems with it please help by fixing or posting files that cause
problems so we can design more tests.

I have just jumped into phylogenetics in school and realize that our nexus
writer/reader could be a little more PAUP friendly - hope to add that
soon.  Would be nice to make sure everything else plays with other apps
nicely.

-jason

On Wed, 10 Oct 2001, Elia Stupka wrote:

> > Did you (or anyone else) get around to writing a bioperl object
that can
> > read in PHYLIP format tree files? I am on the verge of writing one; it
> > wouldn't take long, but there's no sense duplicating effort.
>
> No, I haven't, neither has my group in Singapore, just mailing bioperl, to
> check if Jason or others are working on it.
>
> Elia
>
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-- 
Jason Stajich
Duke University
jason@cgt.mc.duke.edu