April 2011 Archives by thread

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Starting: Fri Apr 1 00:19:33 UTC 2011
Ending: Sat Apr 30 23:19:55 UTC 2011
Messages: 186

• [Bioperl-l] BEDTools.pm update   Chris Fields
• [Bioperl-l] git help   Scott Cain
  • [Bioperl-l] git help   Chris Fields
  • [Bioperl-l] git help   Chris Fields
• [Bioperl-l] StandAloneBlastPlus Question   Veronica A.
  • [Bioperl-l] StandAloneBlastPlus Question   Dave Messina
• [Bioperl-l] StandAloneBlastPlus Question   Veronica A.
  • [Bioperl-l] StandAloneBlastPlus Question   Chris Fields
• [Bioperl-l] type=MyISAM   Lincoln Stein
• [Bioperl-l] git help   Jonathan "Duke" Leto
  • [Bioperl-l] git help   Dave Messina
• [Bioperl-l] type=MyISAM & regression in Bio::DB::GFF   Lincoln Stein
  • [Bioperl-l] type=MyISAM & regression in Bio::DB::GFF   Scott Cain
• [Bioperl-l] How to remove rRNAs from libraries   Juan Jovel
• [Bioperl-l] Failure when parsing a massive Entrez (GenBank) query.   Guillermo Fernández
  • [Bioperl-l] Failure when parsing a massive Entrez (GenBank) query.   Chris Fields
• [Bioperl-l] Bio::DB::Fasta bug   Chris Fields
  • [Bioperl-l] Bio::DB::Fasta bug   Chris Fields
• [Bioperl-l] Genbank to GFF conversion   Rachita Sharma
  • [Bioperl-l] Genbank to GFF conversion   Jason Stajich
• [Bioperl-l] Pull Codon/Amino Acid Change from Genome Reference Data   Chris_Moy
• [Bioperl-l] not recognizing hsp in a hit   pageski
  • [Bioperl-l] not recognizing hsp in a hit   Dave Messina
• [Bioperl-l] How to install Bio::Tools::HMM ?   sydghyyh14
  • [Bioperl-l] How to install Bio::Tools::HMM ?   Chris Fields
• [Bioperl-l] Summer of Code Proposal   Fei Hu
  • [Bioperl-l] Summer of Code Proposal   Dave Messina
    • [Bioperl-l] Summer of Code Proposal   Fei Hu
      • [Bioperl-l] Summer of Code Proposal   Chris Fields
      • [Bioperl-l] Summer of Code Proposal   Fei Hu
• [Bioperl-l] Parsing BLAST -m 9 reports   Lorenzo Carretero
• [Bioperl-l] not recognizing hsp in a hit   Dave Messina
  • [Bioperl-l] not recognizing hsp in a hit   Dave Messina
    • [Bioperl-l] not recognizing hsp in a hit   Steve Chervitz
      • [Bioperl-l] not recognizing hsp in a hit   pageski
• [Bioperl-l] blast results: how to get forward/reverse strand info?   fpf at biochem.mpg.de
  • [Bioperl-l] blast results: how to get forward/reverse strand info?   Dave Messina
• [Bioperl-l] Sorting BLAST hits by score   Lorenzo Carretero
  • [Bioperl-l] Sorting BLAST hits by score   Dave Messina
    • [Bioperl-l] Sorting BLAST hits by score   Lorenzo Carretero
      • [Bioperl-l] Sorting BLAST hits by score   Chris Fields
• [Bioperl-l] Who is going to BOSC 2011 / Codefest 2011 ?   Torsten Seemann
  • [Bioperl-l] Who is going to BOSC 2011 / Codefest 2011 ?   Hilmar Lapp
  • [Bioperl-l] Who is going to BOSC 2011 / Codefest 2011 ?   Chris Fields
• [Bioperl-l] Bio::DB::GFF/Postgres test failures   Scott Cain
  • [Bioperl-l] Bio::DB::GFF/Postgres test failures   Lincoln Stein
    • [Bioperl-l] Bio::DB::GFF/Postgres test failures   Scott Cain
      • [Bioperl-l] Bio::DB::GFF/Postgres test failures   Lincoln Stein
      • [Bioperl-l] Bio::DB::GFF/Postgres test failures   Scott Cain
      • [Bioperl-l] Bio::DB::GFF/Postgres test failures   Chris Fields
      • [Bioperl-l] Bio::DB::GFF/Postgres test failures   Scott Cain
      • [Bioperl-l] Bio::DB::GFF/Postgres test failures   Chris Fields
      • [Bioperl-l] Bio::DB::GFF/Postgres test failures   Lincoln Stein
      • [Bioperl-l] Bio::DB::GFF/Postgres test failures   Chris Fields
      • [Bioperl-l] Bio::DB::GFF/Postgres test failures   Scott Cain
      • [Bioperl-l] Bio::DB::GFF/Postgres test failures   Scott Cain
      • [Bioperl-l] Bio::DB::GFF/Postgres test failures   Chris Fields
      • [Bioperl-l] Bio::DB::GFF/Postgres test failures   Lincoln Stein
• [Bioperl-l] Q: batched extraction of sub-sequences and their reverse-complements ?   wadim kapulkin
  • [Bioperl-l] Q: batched extraction of sub-sequences and their reverse-complements ?   Dave Messina
• [Bioperl-l] Output of a BLAST parse to text file   T.Hori
  • [Bioperl-l] Output of a BLAST parse to text file   Frank Schwach
• [Bioperl-l] Accessing nucleotide sequence   subarna thakur
• [Bioperl-l] bioperl vs other bio*   Albert Vilella
  • [Bioperl-l] bioperl vs other bio*   Miguel Pignatelli
    • [Bioperl-l] bioperl vs other bio*   Chris Fields
  • [Bioperl-l] bioperl vs other bio*   Yifei Huang
• [Bioperl-l] Fwd: blast results: how to get forward/reverse strand info?   Dave Messina
• [Bioperl-l] [Announcement] Next BioPerl release   Chris Fields
  • [Bioperl-l] [Announcement] Next BioPerl release   Lincoln Stein
• [Bioperl-l] Bug? Phyml parameters   Adam Retchless
  • [Bioperl-l] Bug? Phyml parameters   Jason Stajich
• [Bioperl-l] Bio::DB::GFF table creation problems/test failures   Scott Cain
  • [Bioperl-l] Bio::DB::GFF table creation problems/test failures   Lincoln Stein
    • [Bioperl-l] Bio::DB::GFF table creation problems/test failures   Scott Cain
      • [Bioperl-l] Bio::DB::GFF table creation problems/test failures   Scott Cain
      • [Bioperl-l] Bio::DB::GFF table creation problems/test failures   Lincoln Stein
      • [Bioperl-l] Bio::DB::GFF table creation problems/test failures   Scott Cain
      • [Bioperl-l] Bio::DB::GFF table creation problems/test failures   Chris Fields
      • [Bioperl-l] Bio::DB::GFF table creation problems/test failures   Chris Fields
      • [Bioperl-l] Bio::DB::GFF table creation problems/test failures   Lincoln Stein
      • [Bioperl-l] Bio::DB::GFF table creation problems/test failures   Scott Cain
• [Bioperl-l] SeqIO STDOUT changed?   Jason Stajich
  • [Bioperl-l] SeqIO STDOUT changed?   Chris Fields
    • [Bioperl-l] SeqIO STDOUT changed?   Jason Stajich
• [Bioperl-l] Some questions about the Bio::PopGen   Qian Zhao
• [Bioperl-l] Problem with ka/ks ratio   subarna thakur
• [Bioperl-l] Bug in a simple bioperl graphics program   Richard Harrison
  • [Bioperl-l] Bug in a simple bioperl graphics program   Lincoln Stein
• [Bioperl-l] Bioinformatics Open Source Conference (BOSC 2011)--Abstracts due April 18th!   Brad Chapman
• [Bioperl-l] Clean handling of SQLite choice when running ./Build test   Scott Cain
  • [Bioperl-l] Clean handling of SQLite choice when running ./Build test   Chris Fields
  • [Bioperl-l] Clean handling of SQLite choice when running ./Build test   Lincoln Stein
  • [Bioperl-l] Clean handling of SQLite choice when running ./Build test   Chris Fields
    • [Bioperl-l] Clean handling of SQLite choice when running ./Build test   Scott Cain
      • [Bioperl-l] Clean handling of SQLite choice when running ./Build test   Chris Fields
      • [Bioperl-l] Clean handling of SQLite choice when running ./Build test   Chris Fields
• [Bioperl-l] Fwd: Q: batched extraction of sub-sequences and their reverse-complements ?   Dave Messina
  • [Bioperl-l] Fwd: Q: batched extraction of sub-sequences and their reverse-complements ?   Chris Fields
• [Bioperl-l] GD version required/Align::Graphics (was: Re: Clean handling of SQLite choice when running ./Build test   Scott Cain
  • [Bioperl-l] GD version required/Align::Graphics (was: Re: Clean handling of SQLite choice when running ./Build test   Chris Fields
    • [Bioperl-l] GD version required/Align::Graphics (was: Re: Clean handling of SQLite choice when running ./Build test   Scott Cain
      • [Bioperl-l] GD version required/Align::Graphics (was: Re: Clean handling of SQLite choice when running ./Build test   Lincoln Stein
• [Bioperl-l] last call for Google Summer of Code mentors   Robert Buels
• [Bioperl-l] provide examples of good and bad ML questions for a candidate 'Ten Simple Rules' article   Giovanni Marco Dall'Olio
• [Bioperl-l] [ANNOUNCEMENT] BioPerl 1.6.9 released   Chris Fields
  • [Bioperl-l] [ANNOUNCEMENT] BioPerl 1.6.9 released   Robert Buels
    • [Bioperl-l] [ANNOUNCEMENT] BioPerl 1.6.9 released   Dave Messina
      • [Bioperl-l] [ANNOUNCEMENT] BioPerl 1.6.9 released   Jason Stajich
      • [Bioperl-l] [ANNOUNCEMENT] BioPerl 1.6.9 released   Hilmar Lapp
      • [Bioperl-l] [ANNOUNCEMENT] BioPerl 1.6.9 released   Diego M. Vadell
      • [Bioperl-l] [ANNOUNCEMENT] BioPerl 1.6.9 released   Florent Angly
      • [Bioperl-l] [ANNOUNCEMENT] BioPerl 1.6.9 released   Chirag Matkar
      • [Bioperl-l] [ANNOUNCEMENT] BioPerl 1.6.9 released   Steve Chervitz
• [Bioperl-l] Bioperl installation doubt   Brian Osborne
  • [Bioperl-l] Bioperl installation doubt   Chris Fields
• [Bioperl-l] FW: Pal2Nal problem   Sun, Xinli
  • [Bioperl-l] FW: Pal2Nal problem   Roy Chaudhuri
• [Bioperl-l] Use of uninitialized value in length at Bio/DB/SeqFeature/Store/DBI/mysql.pm line 1062   Dan Bolser
  • [Bioperl-l] Use of uninitialized value in length at Bio/DB/SeqFeature/Store/DBI/mysql.pm line 1062   Peter Cock
• [Bioperl-l] 454 raw Quality   Andrei Tudor
• [Bioperl-l] Species tree and partition   Radhouane Aniba
• [Bioperl-l] 454 raw Quality   Andrei Tudor
  • [Bioperl-l] 454 raw Quality   Joshua Udall
• [Bioperl-l] From Blast hits to Taxanomy lineage for Short DNA Sequences (reads)   Abhishek Pratap
• [Bioperl-l] [Quick help needed] Getting Organism info using NCBI Accession numbers : sample code included   Abhishek Pratap
  • [Bioperl-l] [Quick help needed] Getting Organism info using NCBI Accession numbers : sample code included   Abhishek Pratap
  • [Bioperl-l] [Quick help needed] Getting Organism info using NCBI Accession numbers : sample code included   John SJ Anderson
    • [Bioperl-l] [Quick help needed] Getting Organism info using NCBI Accession numbers : sample code included   Abhishek Pratap
      • [Bioperl-l] [Quick help needed] Getting Organism info using NCBI Accession numbers : sample code included   shalabh sharma
      • [Bioperl-l] [Quick help needed] Getting Organism info using NCBI Accession numbers : sample code included   Joel Martin
• [Bioperl-l] installation error   Tim
  • [Bioperl-l] installation error   Mike Williams
• [Bioperl-l] Retaining seqnos from clustal output in AlignIO   Lee Katz
  • [Bioperl-l] Retaining seqnos from clustal output in AlignIO   Dave Messina
• [Bioperl-l] nucleotide sequences from peptide id   shalabh sharma
  • [Bioperl-l] nucleotide sequences from peptide id   Dave Messina
• [Bioperl-l] Bio::Biblio::MedlineArticle.pm   Tom Keller
  • [Bioperl-l] Bio::Biblio::MedlineArticle.pm   Kevin Brown
• [Bioperl-l] AlignIO   Daniel Campo
  • [Bioperl-l] AlignIO   Chris Fields
• [Bioperl-l] Problem with paml+codeml   subarna thakur
• [Bioperl-l] bootstrap replicates   lberna at adinet.com.uy
• [Bioperl-l] From Blast hits to Taxanomy lineage for Short DNA Sequences (reads)   Abhishek Pratap
• [Bioperl-l] PAML::Codeml   SunXinli
• [Bioperl-l] [ANNOUNCEMENT] BioPerl-DB, Run, Network 1.6.900 released   Chris Fields
• [Bioperl-l] ESummary document   Luis-Miguel Rodríguez Rojas
  • [Bioperl-l] ESummary document   Chris Fields
    • [Bioperl-l] ESummary document   Luis-Miguel Rodríguez Rojas
• [Bioperl-l] Leave-one-out cross-correlation   Chet Seligman
• [Bioperl-l] Metadata file problems installing BioPerl   Mehmet
• [Bioperl-l] Announcing OBF Google Summer of Code Accepted Students   Robert Buels
• [Bioperl-l] GSoC/BioPerl Reorganization Project   Sheena Scroggins
  • [Bioperl-l] GSoC/BioPerl Reorganization Project   Chris Fields
    • [Bioperl-l] GSoC/BioPerl Reorganization Project   Dave Messina
    • [Bioperl-l] GSoC/BioPerl Reorganization Project   Sheena Scroggins
      • [Bioperl-l] GSoC/BioPerl Reorganization Project   Chris Fields
      • [Bioperl-l] GSoC/BioPerl Reorganization Project   Robert Buels
      • [Bioperl-l] Re: GSoC/BioPerl Reorganization Project   Siddhartha Basu
      • [Bioperl-l] GSoC/BioPerl Reorganization Project   Robert Buels
      • [Bioperl-l] GSoC/BioPerl Reorganization Project   Chris Fields
      • [Bioperl-l] GSoC/BioPerl Reorganization Project   Dave Messina
• [Bioperl-l] Bio::Tools::Run::RepeatMasker issues   Graham Hamilton
  • [Bioperl-l] Bio::Tools::Run::RepeatMasker issues   Roy Chaudhuri
• [Bioperl-l] [BioPerl]RepeatMasker issues   Graham Hamilton
  • [Bioperl-l] [BioPerl]RepeatMasker issues   Jason Stajich
• [Bioperl-l] Adding mouseover functionality to bioperl graphics images   Stephens, Robert (NIH/NCI) [C]
  • [Bioperl-l] Adding mouseover functionality to bioperl graphics images   Sean Davis
• [Bioperl-l] Handling hierarchical phylogeny based data in bio-/perl   Abhishek Pratap
• [Bioperl-l] Convert fastq to fasta   perlbio007
  • [Bioperl-l] Convert fastq to fasta   Cook, Malcolm
• [Bioperl-l] Standalone blast   khush ........
  • [Bioperl-l] Standalone blast   Dave Messina
    • [Bioperl-l] Standalone blast   khush ........
      • [Bioperl-l] Standalone blast   Florent Angly
      • [Bioperl-l] Standalone blast   khush ........
• [Bioperl-l] installation problem with Bio::Tools::Run::StandAloneBlastPlus module   heyi xiao
  • [Bioperl-l] installation problem with Bio::Tools::Run::StandAloneBlastPlus module   Chris Fields
    • [Bioperl-l] installation problem with Bio::Tools::Run::StandAloneBlastPlus module   heyi xiao
• [Bioperl-l] Bioperl-l Digest, Vol 96, Issue 28   khush ........
  • [Bioperl-l] Bioperl-l Digest, Vol 96, Issue 28   Florent Angly
• [Bioperl-l] Question about Bio::Coordinate::Pair   Dan Bolser
  • [Bioperl-l] Question about Bio::Coordinate::Pair   Robert Buels
• [Bioperl-l] Clustalw problems!!!   duxroq
  • [Bioperl-l] Clustalw problems!!!   Chris Fields
• [Bioperl-l] Convert fastq to fasta   Tao Zhu

Last message date: Sat Apr 30 23:19:55 UTC 2011
Archived on: Mon Jun 16 02:51:28 UTC 2014

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