[Bioperl-l] [ANNOUNCEMENT] BioPerl 1.6.9 released

[Dave Messina]

Thanks, Chris! This is a PumpKing Extraordinaire, everybody. Give it up.


Dave





On Thu, Apr 14, 2011 at 22:14, Robert Buels <rmb32 at cornell.edu> wrote:

> Hurray!  Chris, you are tremendous.  Seriously.
>
> Rob
>
>
>
> On 04/14/2011 12:57 PM, Chris Fields wrote:
>
>> All,
>>
>> BioPerl 1.6.9 is now available in CPAN.  In this release:
>>
>> * Refactored Bio::Species/Bio::Tree
>> * New SeqIO modules (gbxml, msout, mbsout)
>> * Updates for perl 5.12
>> * Bio::Assembly support for SAM/BAM, Newbler, ace output
>> * Bio::DB::SeqFeature updates
>> * PAML updated to work with v. 4.4d
>> * lots of various bug fixes, around 50
>>
>> Just to note, this is the first release after I reworked the Build.PL
>> system, so we will probably hit a few speed bumps along the way.  This is in
>> effort to simplify the process for further work this summer on modularizing
>> BioPerl, but it also makes new releases much easier to make.  In particular,
>> this has only been tested on Ubuntu Linux and Mac OS X (no Windows testing
>> has occurred yet).    Please post if there are any problems.
>>
>> Enjoy!
>>
>> chris
>>
>>
>>
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>>
>>
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