[Bioperl-l] installation error
Tim
timmcilveen at talktalk.net
Fri Apr 15 23:35:21 UTC 2011
Hi everyone,
I'm having a problem installing Bioperl with my new install of Fedora 14.
I have installed bioperl using GitHub.
$ git clone git://github.com/bioperl/bioperl-live.git
I told Perl where to find it:
export PERL5LIB="$HOME/tm2383/bioperl-live:$PERL5LIB"
Then I tested the install:
$ perl -MBio::Perl -le 'print Bio::Perl->VERSION;'
I got this error:
Can't locate Bio/Perl.pm in @INC (@INC contains:
/usr/local/lib64/perl5 /usr/local/share/perl5
/usr/lib64/perl5 /usr/share/perl5 /usr/lib64/perl5
/usr/share/perl5
/usr/local/lib64/perl5/site_perl/5.10.0/x86_64-linux-thread-multi
/usr/local/lib/perl5/site_perl/5.10.0
/usr/lib64/perl5/vendor_perl/5.10.0/x86_64-linux-thread-multi /usr/lib/perl5/vendor_perl
/usr/lib/perl5/site_perl .).
I have checked my Perl installation:
find / -name 'perl'
/usr/bin/perl
/usr/src/kernels/2.6.35.11-83.fc14.x86_64/tools/perf/scripts/perl
/usr/src/kernels/2.6.35.6-45.fc14.x86_64/tools/perf/scripts/perl
/usr/libexec/perf-core/scripts/perl
My Perl is is /usr/bin/perl, but for some reason /usr/local/lib64/perl5
is being mentioned in the error message. I'm not expert at Linux, so I
have reported all I can about the problem, using the information that I
knew how to retrieve. I hope this helps!
Any advice would be great
Tim
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