[Bioperl-l] [ANNOUNCEMENT] BioPerl 1.6.9 released

[Chirag Matkar]

Great Effort!!




On Sat, Apr 16, 2011 at 11:17 AM, Florent Angly <florent.angly at gmail.com>wrote:

> Awesome! Thanks to everyone for the efforts they put in the new version.
> Florent
>
>
> On 16/04/11 01:50, Diego M. Vadell wrote:
>
>> Thank you very much!!
>>
>>  -- Diego
>>
>> On Thursday, April 14, 2011 10:22:04 pm Hilmar Lapp wrote:
>>
>>> Yeah - awesome, congrats, that was fast!
>>>
>>>        -hilmar
>>>
>>> On Apr 14, 2011, at 5:57 PM, Jason Stajich wrote:
>>>
>>>> Excellent news Chris - thanks for the hard work!
>>>>
>>>> -jason
>>>>
>>>> On Apr 14, 2011, at 1:56 PM, Dave Messina wrote:
>>>>
>>>>> Thanks, Chris! This is a PumpKing Extraordinaire, everybody. Give
>>>>> it up.
>>>>>
>>>>>
>>>>> Dave
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>
>>>>> On Thu, Apr 14, 2011 at 22:14, Robert Buels<rmb32 at cornell.edu>
>>>>>
>>>>> wrote:
>>>>>
>>>>>> Hurray!  Chris, you are tremendous.  Seriously.
>>>>>>
>>>>>> Rob
>>>>>>
>>>>>> On 04/14/2011 12:57 PM, Chris Fields wrote:
>>>>>>
>>>>>>> All,
>>>>>>>
>>>>>>> BioPerl 1.6.9 is now available in CPAN.  In this release:
>>>>>>>
>>>>>>> * Refactored Bio::Species/Bio::Tree
>>>>>>> * New SeqIO modules (gbxml, msout, mbsout)
>>>>>>> * Updates for perl 5.12
>>>>>>> * Bio::Assembly support for SAM/BAM, Newbler, ace output
>>>>>>> * Bio::DB::SeqFeature updates
>>>>>>> * PAML updated to work with v. 4.4d
>>>>>>> * lots of various bug fixes, around 50
>>>>>>>
>>>>>>> Just to note, this is the first release after I reworked the
>>>>>>> Build.PL
>>>>>>> system, so we will probably hit a few speed bumps along the way.
>>>>>>> This is in
>>>>>>> effort to simplify the process for further work this summer on
>>>>>>> modularizing
>>>>>>> BioPerl, but it also makes new releases much easier to make.  In
>>>>>>> particular,
>>>>>>> this has only been tested on Ubuntu Linux and Mac OS X (no
>>>>>>> Windows testing
>>>>>>> has occurred yet).    Please post if there are any problems.
>>>>>>>
>>>>>>> Enjoy!
>>>>>>>
>>>>>>> chris
>>>>>>>
>>>>>>>
>>>>>>>
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>>>>>>>
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>
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-- 
Regards,
Chirag Matkar
BTech Bioinformatics,
Red Hat Certified Engineer,
Software Engineer ,Cenveo